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[186289_at]

Description F55G1.14 /REP_DB=WormBase Gene ID /WP=CE07290 /TR=Q20853 /GB=AAB00654.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_total > 21      4grp_total > 39      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 549.7
(3)
P 		165.4
(-2.2)
P 		106.8
(-3)
P 		222.8
(-1.4)
P 		443
B 648.7
(3)
P 		164.9
(-2.5)
P 		118.4
(-3)
P 		250.2
(-1.5)
P 		530
C 629.4
(3)
P 		129
(-3)
P 		147.2
(-2.8)
P 		210.2
(-2)
P 		500
avr 609.3
(3) 		153.1
(-2.6) 		124.1
(-3) 		227.7
(-1.7) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 200
(0.6)
P 		235.5
(1.5)
P 		297
(3)
P 		163.4
(-0.3)
P 		66.4
(-2.7)
P 		52.6
(-3)
A 		244
B 190.4
(0.8)
P 		257.6
(3)
P 		198.4
(1.1)
P 		111
(-1.7)
P 		96.3
(-2.2)
P 		70.1
(-3)
P 		188
C 148.3
(-0.4)
P 		239
(3)
P 		196.3
(1.4)
P 		156.7
(-0.1)
P 		101.7
(-2.2)
P 		80.3
(-3)
A 		159
avr 179.6
(0.8) 		244
(3) 		230.6
(2.5) 		143.7
(-0.4) 		88.1
(-2.3) 		67.7
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 200.1
(3)
P 		35.9
(-2.7)
P 		27.9
(-3)
P 		32.6
(-2.8)
P 		172
B 206.9
(3)
P 		40.7
(-2.6)
P 		27.4
(-3)
P 		53.3
(-2.1)
P 		180
C 208.4
(3)
P 		37.1
(-2.9)
P 		51.3
(-2.4)
P 		35.4
(-3)
P 		173
avr 205.1
(3) 		37.9
(-2.9) 		35.5
(-3) 		40.4
(-2.8) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 36.9
(-1)
P 		83.7
(3)
P 		64.7
(1.4)
P 		41.5
(-0.6)
P 		20
(-2.4)
P 		12.8
(-3)
A 		71
B 66.3
(1)
P 		85.8
(3)
P 		48.2
(-0.8)
P 		29.4
(-2.7)
P 		39.1
(-1.7)
P 		26.1
(-3)
P 		60
C 55
(0.7)
P 		72.9
(3)
P 		50
(0)
P 		31.5
(-2.4)
P 		32.9
(-2.2)
P 		26.9
(-3)
A 		46
avr 52.7
(0.1) 		80.8
(3) 		54.3
(0.3) 		34.1
(-1.8) 		30.7
(-2.1) 		21.9
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9838
Sequence Type Exemplar sequence
Representative Public ID F55G1.14 NCBI
Target Description F55G1.14 /REP_DB=WormBase Gene ID /WP=CE07290 /TR=Q20853 /GB=AAB00654.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068808 NCBI Caenorhabditis elegans F55G1.15 (F55G1.15) mRNA, complete cds. 11/11 A 
SNAP00000005176 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
GENEFINDER00000005182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
F55G1.15 ENSEMBL cdna:known chromosome:CEL140:IV:7498113:7499959:-1 gene:F55G1.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7498118-7499965(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G1.15
Entrez Gene 186329 Entrez gene
SwissProt Q20854 EMBL-EBI
WormBase CE35980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00653 Hypothetical protein F55G1.13 [Caenorhabditis elegans] ref|NP_501207.1| F55G1.13 [Caenorhabditis elegans] 0.0
blast CAE61899 Hypothetical protein CBG05890 [Caenorhabditis briggsae] 0.0
blast AAB00655 Hypothetical protein F55G1.15 [Caenorhabditis elegans] ref|NP_501209.3| F55G1.15 [Caenorhabditis elegans] 1.0E-171
blast AAB00655 Hypothetical protein F55G1.15 [Caenorhabditis elegans] ref|NP_501209.3| F55G1.15 [Caenorhabditis elegans] 1.0E-169
blast CAE61900 Hypothetical protein CBG05891 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501209.3 5 31-53,74-96,106-128,185-207,230-252
F55G1.15 5 31-53,74-96,106-128,185-207,230-252
SNAP00000005176 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1407-1438
GENEFINDER00000005182 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1419-1450
Sequence
Target Sequence 
>C. ELEGANS:186289_AT
tgcagttcgacgacttttagccctttcggataaggattgtattgcaacgaaaagattttt
gcctctggcatgtctagcaggtcttttgcttgcttggattcattttggagtgactttctt
tcaaacttcccttatcaaatatcaactgaccgatgaaaaattcccattctcgagcacaac
acttatatgtatgatcttcactcaaacattgttccctgctgattatctatacgcattcac
tgtttctggatgttatttggaattcctccagagatatcttaatatgggatatttccaact
tggagaaccacgtataaccacaggccatggaggtcatggacacagtcatggtcatggatc
agctgatcatgagaagcatcatagtgaagacaaccacaaagacaaagtagcttctatgtt
gtatgcagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGTTCGACGACTTTTAGCCCTT 514 577 723 Antisense
GCCTCTGGCATGTCTAGCAGGTCTT 447 279 783 Antisense
GCAGGTCTTTTGCTTGCTTGGATTC 160 311 799 Antisense
GAGTGACTTTCTTTCAAACTTCCCT 352 399 830 Antisense
TGAAAAATTCCCATTCTCGAGCACA 449 573 876 Antisense
GATCTTCACTCAAACATTGTTCCCT 43 421 915 Antisense
ATTGTTCCCTGCTGATTATCTATAC 133 5 930 Antisense
ATCTATACGCATTCACTGTTTCTGG 275 31 947 Antisense
GAACCACGTATAACCACAGGCCATG 638 345 1027 Antisense
GTCATGGTCATGGATCAGCTGATCA 190 467 1067 Antisense
GTAGCTTCTATGTTGTATGCAGCCA 248 457 1129 Antisense
Sequence Source Affymetrix Proprietary Database