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[186288_at]

Description F53A10.1 /REP_DB=WormBase Gene ID /WP=CE10890 /TR=O16570 /GB=AAB66048.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 15.1
(-2.9)
A 		15.3
(-2.6)
A 		15
(-3)
A 		19.6
(3)
A 		5
B 48.3
(-0)
A 		90
(3)
A 		18.2
(-2.2)
A 		6.6
(-3)
A 		83
C 57.6
(3)
A 		19.2
(-1.6)
A 		14.3
(-2.2)
A 		7.4
(-3)
A 		50
avr 40.3
(2.8) 		41.5
(3) 		15.8
(-2.1) 		11.2
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 18.5
(3)
A 		14.8
(1.3)
A 		10.3
(-0.8)
A 		5.4
(-3)
A 		10
(-0.9)
A 		5.7
(-2.9)
A 		13
B 15.8
(-0.8)
A 		15.2
(-0.9)
A 		16.1
(-0.7)
A 		13.9
(-1.2)
A 		32.1
(3)
A 		6.3
(-3)
A 		26
C 48.5
(3)
A 		13.2
(-1.9)
A 		9
(-2.5)
A 		9.5
(-2.4)
A 		12.6
(-2)
A 		5.5
(-3)
A 		43
avr 27.6
(3) 		14.4
(-0.6) 		11.8
(-1.3) 		9.6
(-2) 		18.2
(0.4) 		5.8
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 5.5
(3)
A 		3.3
(-2.1)
A 		3.9
(-0.7)
A 		2.9
(-3)
A 		3
B 15.4
(1)
A 		22.2
(3)
A 		4.2
(-2.2)
A 		1.4
(-3)
A 		21
C 19.1
(3)
A 		5.5
(-1.6)
A 		5
(-1.8)
A 		1.3
(-3)
A 		18
avr 13.3
(3) 		10.3
(1.4) 		4.4
(-1.7) 		1.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.4
(0.1)
A 		5.3
(3)
A 		2.2
(-1.8)
A 		1.4
(-3)
A 		3
(-0.5)
A 		1.4
(-3)
A 		4
B 5.5
(-1.2)
A 		5.1
(-1.4)
A 		3.9
(-2.1)
A 		3.7
(-2.2)
A 		13
(3)
A 		2.3
(-3)
A 		11
C 18
(3)
A 		4
(-2.2)
A 		2.3
(-2.8)
A 		1.9
(-3)
A 		4.1
(-2.1)
A 		1.8
(-3)
A 		16
avr 9
(3) 		4.8
(-0.5) 		2.8
(-2.2) 		2.3
(-2.6) 		6.7
(1.1) 		1.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5817
Sequence Type Exemplar sequence
Representative Public ID F53A10.1 NCBI
Target Description F53A10.1 /REP_DB=WormBase Gene ID /WP=CE10890 /TR=O16570 /GB=AAB66048.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027019 NCBI Caenorhabditis elegans F53A10.2c (F53A10.2) mRNA, complete cds. 11/11 None
F53A10.2c ENSEMBL cdna:known chromosome:CEL140:II:1224357:1230471:1 gene:F53A10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173502 3 1 NM_001027019 186288_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1224355-1224937(+) 100.0 100.0
Public Domain and Genome References
Ensembl F53A10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66048 Hypothetical protein F53A10.2c [Caenorhabditis elegans] ref|NP_001022190.1| F53A10.2c [Caenorhabditis elegans] 0.0
blast AAK71368 Hypothetical protein F53A10.2a [Caenorhabditis elegans] ref|NP_493928.1| F53A10.2a [Caenorhabditis elegans] 0.0
blast AAO27840 Rap1GAP [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000331 EMBL-EBI Rap/ran-GAP 2.5E-112
Sequence
Target Sequence 
>C. ELEGANS:186288_AT
tgctccactttatagactcatccgagtccgaggatgatctagacgagttgccacgtcatc
taccgcccgtgattcggaggctggctccgttgcggcatgccacgtcacaatacaatctga
gatccactggcagcacctcttcagactcctccacggcgtcggaaaatgataaatgctccg
atttttcaagcctaaaatcccgccgggcttcttgtattgagcttaacaaggaggatgagt
tcaaggtgatggctgctgataagcttctgatggctatggagaacatgaagcatgccacgt
catcacaggcgatacgatggaggacgacttctacggagtctctgccagggattatcaagt
cgaatagacggcactcgaagggtccgctggagttgattcagggcctgatggccaagaagg
cggccgtggggaggcccgcgaaattcaaaaatttgggagttgttggaccgcccacgctta
tttcgtcgacggtctcgttgcatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCACTTTATAGACTCATCCGA 515 581 14 Antisense
GAGGATGATCTAGACGAGTTGCCAC 229 403 43 Antisense
GTGATTCGGAGGCTGGCTCCGTTGC 447 483 82 Antisense
CTCCTCCACGGCGTCGGAAAATGAT 20 233 159 Antisense
AAATGCTCCGATTTTTCAAGCCTAA 51 119 184 Antisense
TAAAATCCCGCCGGGCTTCTTGTAT 28 641 206 Antisense
AACATGAAGCATGCCACGTCATCAC 584 137 295 Antisense
AGGACGACTTCTACGGAGTCTCTGC 400 55 334 Antisense
ATAGACGGCACTCGAAGGGTCCGCT 312 1 377 Antisense
GGTCCGCTGGAGTTGATTCAGGGCC 688 501 394 Antisense
TCGTCGACGGTCTCGTTGCATGAGA 437 605 496 Antisense
Sequence Source Affymetrix Proprietary Database