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[186287_at]

Description C16C8.10 /REP_DB=WormBase Gene ID /WP=CE08221 /TR=P91046 /GB=AAB37848.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28.1
(1.9)
A 		9.6
(-3)
A 		17.1
(-1)
A 		32.1
(3)
A 		23
B 4.2
(-3)
A 		13.2
(3)
A 		5.6
(-2.1)
A 		11.1
(1.6)
A 		9
C 10.1
(-3)
A 		12.9
(-2.3)
A 		18
(-1)
A 		34.2
(3)
A 		24
avr 14.1
(-2.1) 		11.9
(-3) 		13.6
(-2.3) 		25.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.1
(-0.7)
A 		6.1
(-1.6)
A 		4.9
(-2.2)
A 		3.2
(-3)
A 		16.2
(3)
A 		3.1
(-3)
A 		13
B 5.9
(0.9)
A 		5.1
(-0.3)
A 		7.3
(3)
A 		4.3
(-1.5)
A 		4.7
(-0.9)
A 		3.3
(-3)
A 		4
C 8
(-0.2)
A 		8.3
(0)
A 		12.8
(3)
A 		10.4
(1.4)
A 		4.9
(-2.3)
A 		3.8
(-3)
A 		9
avr 7.3
(1.5) 		6.5
(0.6) 		8.3
(2.7) 		6
(0) 		8.6
(3) 		3.4
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.2
(3)
A 		2.1
(-3)
A 		4.5
(-1.2)
A 		4.7
(-1.1)
A 		8
B 1.3
(-3)
A 		3.3
(3)
A 		1.3
(-3)
A 		2.4
(0.3)
A 		2
C 3.4
(-3)
A 		3.7
(-2.4)
A 		6.3
(3)
A 		5.8
(2)
A 		3
avr 5
(3) 		3
(-3) 		4
(0) 		4.3
(0.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.5
(-2)
A 		2.2
(-1)
A 		1.1
(-2.6)
A 		0.8
(-3)
A 		4.9
(3)
A 		0.8
(-3)
A 		4
B 2.1
(3)
A 		1.7
(0.6)
A 		1.8
(1.2)
A 		1.1
(-3)
A 		1.9
(1.8)
A 		1.2
(-2.4)
A 		1
C 3
(2.1)
A 		2.5
(0.6)
A 		3.3
(3)
A 		2.1
(-0.6)
A 		1.6
(-2.1)
A 		1.3
(-3)
A 		2
avr 2.2
(0.9) 		2.1
(0.5) 		2.1
(0.5) 		1.3
(-2.3) 		2.8
(3) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4097
Sequence Type Exemplar sequence
Representative Public ID C16C8.10 NCBI
Target Description C16C8.10 /REP_DB=WormBase Gene ID /WP=CE08221 /TR=P91046 /GB=AAB37848.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062153 NCBI Caenorhabditis elegans C16C8.10 (C16C8.10) mRNA, complete cds. 11/11 None
SNAP00000014789 ENSEMBL cdna:SNAP chromosome:CEL140:II:3464150:3464675:-1 11/11 None
C16C8.10 ENSEMBL cdna:known chromosome:CEL140:II:3464150:3464675:-1 gene:C16C8.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3464148-3464674(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.10
Entrez Gene 182677 Entrez gene
SwissProt P91046 EMBL-EBI
WormBase CE08221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37848 Hypothetical protein C16C8.10 [Caenorhabditis elegans] ref|NP_494554.1| C16C8.10 [Caenorhabditis elegans] 2.0E-87
blast NP_001022458 Y49F6B.13 [Caenorhabditis elegans] gb|AAY55890.1| Hypothetical protein Y49F6B.13 [Caenorhabditis elegans] 4.0E-28
blast CAE70956 Hypothetical protein CBG17767 [Caenorhabditis briggsae] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186287_AT
ctcgtcgttatcggactttcagtcatctatgcttcagaaaattctgagcatgatcgttta
attcaagatatgaaaacgaggagtattgtgctccaattccaagaacagttcaaaagagcc
atctttacaggagaccttttgaaagttcttccatttatttctccccagaacggtaacacc
aacatcgacgccagcaaacttatgcaagaactaaaagacttggcgccaagatccagagat
tggcactttgtgaatggaaatttgaacgaaatttcatttttagcttacttttgcaagccg
tcaagtccaaccatcaaattgcaaaacgacaattacaaaacgtcaacttttgttctggaa
catgatgctgcaacacttttggaaactggcaactggacactgaagagcatgaccgacctg
gagaccattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTCGTTATCGGACTTTCAGTCA 568 231 34 Antisense
GGACTTTCAGTCATCTATGCTTCAG 462 525 46 Antisense
GGAGTATTGTGCTCCAATTCCAAGA 665 517 113 Antisense
GAGCCATCTTTACAGGAGACCTTTT 140 385 149 Antisense
TCTCCCCAGAACGGTAACACCAACA 267 607 193 Antisense
CCAACATCGACGCCAGCAAACTTAT 56 275 212 Antisense
GACTTGGCGCCAAGATCCAGAGATT 43 371 250 Antisense
GCTTACTTTTGCAAGCCGTCAAGTC 426 305 316 Antisense
CCGTCAAGTCCAACCATCAAATTGC 451 263 331 Antisense
GGAAACTGGCAACTGGACACTGAAG 524 527 414 Antisense
GCATGACCGACCTGGAGACCATTGA 233 307 440 Antisense
Sequence Source Affymetrix Proprietary Database