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[186285_at]

Description C02A12.2 /REP_DB=WormBase Gene ID /WP=CE07826 /TR=O16199 /GB=AAB65265.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 17      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.1
(-3)
A 		16.7
(-0.4)
A 		33.1
(3)
A 		9.3
(-1.9)
A 		29
B 4.7
(-2.3)
A 		6.5
(-1.9)
A 		2.1
(-3)
A 		25.3
(3)
A 		23
C 5.8
(-2.7)
A 		16.5
(-1.6)
A 		3.1
(-3)
A 		61.5
(3)
P 		58
avr 4.9
(-3) 		13.2
(-1.2) 		12.8
(-1.3) 		32
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.1
(0.5)
A 		11.9
(3)
A 		6.3
(-0.7)
A 		3.3
(-2.6)
A 		7.2
(-0.1)
A 		2.7
(-3)
A 		9
B 19.4
(2.9)
A 		2.9
(-2.9)
A 		2.6
(-3)
A 		5.6
(-1.9)
A 		19.6
(3)
A 		3.9
(-2.5)
A 		17
C 3.1
(-2.8)
A 		33.7
(2)
A 		1.9
(-3)
A 		39.7
(2.9)
A 		3.7
(-2.7)
A 		40.2
(3)
P 		38
avr 10.2
(0.1) 		16.2
(3) 		3.6
(-3) 		16.2
(3) 		10.2
(0.1) 		15.6
(2.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-2.9)
A 		3.6
(-1.2)
A 		8.6
(3)
A 		1.4
(-3)
A 		7
B 1.5
(-1.8)
A 		1.6
(-1.7)
A 		0.5
(-3)
A 		5.4
(3)
A 		5
C 1.9
(-2.5)
A 		4.8
(-0.6)
A 		1.1
(-3)
A 		10.4
(3)
P 		9
avr 1.6
(-3) 		3.3
(-0.5) 		3.4
(-0.4) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.5
(-1.6)
A 		4.2
(3)
A 		1.4
(-1.8)
A 		0.8
(-2.8)
A 		2.2
(-0.4)
A 		0.7
(-3)
A 		4
B 6.8
(2)
A 		1
(-2.7)
A 		0.6
(-3)
A 		1.5
(-2.3)
A 		8
(3)
A 		1.5
(-2.3)
A 		7
C 1.2
(-2.7)
A 		10.3
(1.5)
A 		0.5
(-3)
A 		8
(0.5)
A 		1.2
(-2.7)
A 		13.5
(3)
P 		13
avr 3.2
(0.3) 		5.2
(3) 		0.8
(-3) 		3.4
(0.5) 		3.8
(1.1) 		5.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14961
Sequence Type Exemplar sequence
Representative Public ID C02A12.2 NCBI
Target Description C02A12.2 /REP_DB=WormBase Gene ID /WP=CE07826 /TR=O16199 /GB=AAB65265.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071568 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-29) (srbc-29) mRNA, complete cds. 11/11 None
GENEFINDER00000023226 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3469004:3470708:-1 11/11 None
C02A12.2 ENSEMBL cdna:known chromosome:CEL140:V:3469316:3470708:-1 gene:C02A12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023215 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3469315-3474947(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-29
Ensembl C02A12.2
Entrez Gene 182095 Entrez gene
SwissProt Q5F4V7 EMBL-EBI
WormBase CE38023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88413 Serpentine receptor, class bc (class b-like) protein 29 [Caenorhabditis elegans] ref|NP_503969.2| Serpentine Receptor, class BC (class B-like) family member (srbc-29) [Caenorhabditis elegans] 1.0E-147
blast AAW88413 Serpentine receptor, class bc (class b-like) protein 29 [Caenorhabditis elegans] ref|NP_503969.2| Serpentine Receptor, class BC (class B-like) family member (srbc-29) [Caenorhabditis elegans] 1.0E-142
blast T03854 hypothetical protein C02A12.2 - Caenorhabditis elegans 1.0E-141
blast T03854 hypothetical protein C02A12.2 - Caenorhabditis elegans 1.0E-137
blast AAW88414 Serpentine receptor, class bc (class b-like) protein 30 [Caenorhabditis elegans] ref|NP_503970.2| Serpentine Receptor, class BC (class B-like) family member (srbc-30) [Caenorhabditis elegans] 2.0E-87
blast AAW88414 Serpentine receptor, class bc (class b-like) protein 30 [Caenorhabditis elegans] ref|NP_503970.2| Serpentine Receptor, class BC (class B-like) family member (srbc-30) [Caenorhabditis elegans] 3.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.0E-107
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503969.2 7 10-32,44-66,81-103,124-146,176-198,219-238,253-275
C02A12.2 7 10-32,44-66,81-103,124-146,176-198,219-238,253-275
GENEFINDER00000023226 7 10-32,44-66,81-103,124-146,176-198,219-238,253-275
Sequence
Target Sequence 
>C. ELEGANS:186285_AT
ccttggtatattgtcggatcatgccgttctataatcgcactttcaattgcactagaacga
gccactgcagtgtactttccaattttatacagaactagtgctcagaatgttccgaaattt
ttaattttccaagttgccctggtatatggctctttcgattatatagttctatttgtattt
tgtgactgcaaaacaaatttaattcctgaaaactgcaagaatttcggttgtgcagttaac
aaatgtttctccaactatttcagaattcaaagaagtactgtattttccatcaacgtattt
gtatctatacttctctttgtcaatttattcctacgaaatcggaaatacttaaagaaacat
ccaatcaataacaaacctacaaaagcaaatcgtctggcattactggacacttgtacagtg
tttttatttgattttcttccggtcttttgcggcgggatgtggcctaacattttttcaatt
gaagttctgggtccttttacagcggtaatgaaaaccatcggatgtgccatagaatcaaca
gtcgtctcaagtctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTGGTATATTGTCGGATCATGCC 138 269 2152 Antisense
GGATCATGCCGTTCTATAATCGCAC 596 511 2167 Antisense
ATAATCGCACTTTCAATTGCACTAG 690 25 2182 Antisense
GAGCCACTGCAGTGTACTTTCCAAT 339 385 2210 Antisense
AGTTGCCCTGGTATATGGCTCTTTC 627 63 2283 Antisense
CAAATGTTTCTCCAACTATTTCAGA 365 193 2391 Antisense
TGTATCTATACTTCTCTTTGTCAAT 315 561 2451 Antisense
ATCGTCTGGCATTACTGGACACTTG 520 35 2540 Antisense
TTTTGCGGCGGGATGTGGCCTAACA 449 671 2596 Antisense
TGAAGTTCTGGGTCCTTTTACAGCG 706 573 2631 Antisense
GAATCAACAGTCGTCTCAAGTCTCT 356 327 2683 Antisense
Sequence Source Affymetrix Proprietary Database