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[186284_at] 7TM chemoreceptor, srv family

Description T13A10.7 /REP_DB=WormBase Gene ID /WP=CE07488 /TR=Q22445 /GB=AAB38122.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 19      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 1.3
(-2.9)
A 		1.9
(-2.8)
A 		1
(-3)
A 		28.2
(3)
A 		27
B 4.9
(3)
A 		1.1
(-3)
A 		1.8
(-1.9)
A 		2.6
(-0.6)
A 		4
C 6.3
(-2.4)
A 		23.6
(-0)
A 		1.5
(-3)
A 		46.2
(3)
A 		45
avr 4.2
(-2.3) 		8.9
(-1.1) 		1.4
(-3) 		25.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3
(-2.6)
A 		0.8
(-3)
A 		31.2
(3)
A 		1.2
(-2.9)
A 		1.4
(-2.9)
A 		1.6
(-2.8)
A 		30
B 0.7
(-3)
A 		6.4
(2.5)
A 		6.9
(3)
A 		4.5
(0.7)
A 		1.6
(-2.1)
A 		1.2
(-2.5)
A 		6
C 6.1
(-1.7)
A 		8.2
(-1)
A 		20.1
(3)
A 		3.6
(-2.5)
A 		2.2
(-3)
A 		3.2
(-2.7)
A 		18
avr 3.3
(-2.5) 		5.1
(-1.8) 		19.4
(3) 		3.1
(-2.5) 		1.7
(-3) 		2
(-2.9) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.5
(-2.7)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		4.1
(3)
A 		4
B 1.6
(3)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		0.5
(-2.1)
A 		1
C 2.1
(-1.7)
A 		6.8
(2.2)
A 		0.5
(-3)
A 		7.8
(3)
A 		7
avr 1.4
(-1.4) 		2.5
(0.4) 		0.4
(-3) 		4.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.7)
A 		0.3
(-3)
A 		6.8
(3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		7
B 0.3
(-3)
A 		2.1
(3)
A 		1.7
(1.7)
A 		1.2
(-0)
A 		0.6
(-2)
A 		0.5
(-2.3)
A 		2
C 2.3
(-0.8)
A 		2.5
(-0.5)
A 		5.1
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.1
(-2.5)
A 		4
avr 1.1
(-2.2) 		1.6
(-1.5) 		4.5
(3) 		0.7
(-2.8) 		0.6
(-3) 		0.7
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10466
Sequence Type Exemplar sequence
Representative Public ID T13A10.7 NCBI
Target Description T13A10.7 /REP_DB=WormBase Gene ID /WP=CE07488 /TR=Q22445 /GB=AAB38122.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068548 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-30) (srv-30) mRNA, complete cds. 11/11 None
GENEFINDER00000039102 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6267441:6269430:-1 11/11 None
T13A10.7 ENSEMBL cdna:known chromosome:CEL140:IV:6267441:6269430:-1 gene:T13A10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039092 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6267446-6268663(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-30
Ensembl T13A10.7
Entrez Gene 188461 Entrez gene
SwissProt Q22445 EMBL-EBI
WormBase CE38106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500949 Serpentine Receptor, class V family member (srv-30) [Caenorhabditis elegans] gb|AAB38122.3| Serpentine receptor, class v protein 30 [Caenorhabditis elegans] 0.0
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 1.0E-150
blast NP_500951 Serpentine Receptor, class V family member (srv-31) [Caenorhabditis elegans] gb|AAB38123.3| Serpentine receptor, class v protein 31 [Caenorhabditis elegans] 1.0E-148
blast CAE61573 Hypothetical protein CBG05485 [Caenorhabditis briggsae] 1.0E-105
blast T16853 hypothetical protein T13A10.9 - Caenorhabditis elegans 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500949.2 7 9-31,44-66,93-115,135-157,177-199,216-238,253-275
T13A10.7 7 9-31,44-66,93-115,135-157,177-199,216-238,253-275
GENEFINDER00000039102 7 9-31,44-66,93-115,135-157,177-199,220-242,257-279
Sequence
Target Sequence 
>C. ELEGANS:186284_AT
aagatattctatcgcgcaataccctaacggcaatgttaattttgtcatccatgtgtttga
tttgtgtaatttgctacatttctttgtggattaccattcgaaaacatcaaaatgggagtc
aaaatatctctagatcgttcaaacgtgaaatatatttggcatttcaagttcttctcctac
tttgtgcattctttgttatgtatgcctattatctggctgtcaaatatttctcacaagcac
aaaatactgaaccagttttctatattcgtacattttatccaattgccaatggaatccttt
cgtatatcaatccatactgtatcttaattctgaacagagagtttttgaaacaattcaaag
ctatgttgaaatgtcaacttttgaacaagaaatgcaaaagaatagccatagttccttctg
gaattctgaatcatgcattccgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATATTCTATCGCGCAATACCCT 2 157 344 Antisense
CGCGCAATACCCTAACGGCAATGTT 312 255 356 Antisense
AATTTTGTCATCCATGTGTTTGATT 560 175 381 Antisense
GCTACATTTCTTTGTGGATTACCAT 223 303 416 Antisense
CCTACTTTGTGCATTCTTTGTTATG 174 269 519 Antisense
ATGTATGCCTATTATCTGGCTGTCA 555 47 541 Antisense
GAACCAGTTTTCTATATTCGTACAT 514 345 592 Antisense
ATTCGTACATTTTATCCAATTGCCA 621 7 607 Antisense
GAATCCTTTCGTATATCAATCCATA 391 329 635 Antisense
GAATAGCCATAGTTCCTTCTGGAAT 246 327 743 Antisense
GAATTCTGAATCATGCATTCCGGGC 225 325 764 Antisense
Sequence Source Affymetrix Proprietary Database