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[186282_at]

Description Y73F8A.23 /REP_DB=WormBase Gene ID /WP=CE24657 /TR=Q9NA49 /GB=CAB60551.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 16.7
(-0.2)
A 		33.8
(3)
A 		1.5
(-3)
A 		29.3
(2.2)
A 		32
B 1.6
(-3)
A 		27.2
(2.1)
A 		15.5
(-0.2)
A 		31.9
(3)
A 		30
C 2.6
(-3)
A 		10.2
(-1.3)
A 		24.5
(1.8)
A 		30.1
(3)
A 		28
avr 7
(-3) 		23.7
(1.3) 		13.8
(-1.3) 		30.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 12.1
(-1.3)
A 		1.6
(-2.9)
A 		0.8
(-3)
A 		6.5
(-2.1)
A 		19.8
(-0.1)
A 		40.7
(3)
A 		40
B 1.9
(-2.9)
A 		1.3
(-3)
A 		24.5
(2.6)
A 		26
(3)
A 		18.4
(1.2)
A 		12.4
(-0.3)
A 		25
C 2.1
(-2.9)
A 		1.5
(-3)
A 		17.8
(-1)
A 		49.7
(3)
A 		11.8
(-1.7)
A 		14.9
(-1.3)
A 		48
avr 5.4
(-2.1) 		1.5
(-3) 		14.4
(-0) 		27.4
(3) 		16.7
(0.5) 		22.7
(1.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.1
(2)
A 		7.3
(3)
A 		0.4
(-3)
A 		4.3
(0.4)
A 		7
B 0.5
(-3)
A 		6.7
(2.9)
A 		3.6
(-0)
A 		6.8
(3)
A 		6
C 0.9
(-3)
A 		2.9
(-1.4)
A 		8.6
(3)
A 		5.1
(0.3)
A 		8
avr 2.5
(-3) 		5.6
(3) 		4.2
(0.3) 		5.4
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.2
(-1.8)
A 		0.6
(-2.8)
A 		0.2
(-3)
A 		1.6
(-2.1)
A 		6
(0.6)
A 		9.9
(3)
A 		10
B 0.7
(-2.7)
A 		0.4
(-3)
A 		5.9
(1.6)
A 		6.9
(2.5)
A 		7.5
(3)
A 		4.6
(0.5)
A 		7
C 0.8
(-2.8)
A 		0.5
(-3)
A 		4.5
(-0.5)
A 		10
(3)
A 		3.8
(-0.9)
A 		5
(-0.2)
A 		10
avr 1.2
(-2.3) 		0.5
(-3) 		3.5
(0) 		6.2
(2.7) 		5.8
(2.3) 		6.5
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8445
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.23 NCBI
Target Description Y73F8A.23 /REP_DB=WormBase Gene ID /WP=CE24657 /TR=Q9NA49 /GB=CAB60551.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070457 NCBI Caenorhabditis elegans Y73F8A.23 (Y73F8A.23) mRNA, complete cds. 11/11 None
GENEFINDER00000030910 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15442922:15453149:-1 11/11 None
Y73F8A.23 ENSEMBL cdna:known chromosome:CEL140:IV:15442922:15444543:-1 gene:Y73F8A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15442927-15444549(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.23
Entrez Gene 190683 Entrez gene
SwissProt Q9NA49 EMBL-EBI
WormBase CE24657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60551 Hypothetical protein Y73F8A.23 [Caenorhabditis elegans] ref|NP_502858.1| Y73F8A.23 [Caenorhabditis elegans] 1.0E-161
blast CAB70230 Hypothetical protein Y73F8A.24 [Caenorhabditis elegans] ref|NP_502859.2| Y73F8A.24 [Caenorhabditis elegans] 1.0E-129
blast CAB60551 Hypothetical protein Y73F8A.23 [Caenorhabditis elegans] ref|NP_502858.1| Y73F8A.23 [Caenorhabditis elegans] 1.0E-118
blast CAE68086 Hypothetical protein CBG13719 [Caenorhabditis briggsae] 1.0E-100
blast CAB60550 Hypothetical protein Y73F8A.22 [Caenorhabditis elegans] ref|NP_502857.1| Y73F8A.22 [Caenorhabditis elegans] 6.0E-53
blast CAB55141 Hypothetical protein Y116A8C.1 [Caenorhabditis elegans] ref|NP_503002.1| Y116A8C.1 [Caenorhabditis elegans] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004598 EMBL-EBI Transcription factor Tfb2 1.0E-126
Pfam IPR004598 EMBL-EBI Transcription factor Tfb2 3.3E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030910 1 611-633
Sequence
Target Sequence 
>C. ELEGANS:186282_AT
aaggtatccatgccaaagccactgtttggaaacgatactgttacggaaatctatcagtct
gaaacagttgcatataagtacgaaataactgaatgggacataaatggaatggcacaatgg
acatttgatttccagtactttgtgcaatgcgatgatgaatcatttgtatcgattcgagga
gccaatgttgtttgtattacggtacgtgcatttcctgatccctactgcaagaaccgtaca
gctggagagcaattgtgtaaagagggtaatggaagtggaatcacaggaccatactcttac
gatgaaggatataaaatgacagagtatatcgataaaaagctccaagccgaaccgatttct
cagaaattcgattatttcgacttctggactgatggaatttgcagtcaacctgacggacat
aac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTATCCATGCCAAAGCCACTGT 167 159 322 Antisense
GTTACGGAAATCTATCAGTCTGAAA 697 445 361 Antisense
CATTTGATTTCCAGTACTTTGTGCA 413 215 443 Antisense
ATCGATTCGAGGAGCCAATGTTGTT 522 33 489 Antisense
TTACGGTACGTGCATTTCCTGATCC 230 683 518 Antisense
TGATCCCTACTGCAAGAACCGTACA 493 565 537 Antisense
GCAAGAACCGTACAGCTGGAGAGCA 109 321 548 Antisense
GTGGAATCACAGGACCATACTCTTA 420 491 596 Antisense
TCCAAGCCGAACCGATTTCTCAGAA 692 585 662 Antisense
GATTATTTCGACTTCTGGACTGATG 342 429 691 Antisense
TTGCAGTCAACCTGACGGACATAAC 541 691 720 Antisense
Sequence Source Affymetrix Proprietary Database