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[186281_s_at]

Description Y45F10C.2 /REP_DB=WormBase Gene ID /WP=CE16636 /TR=O45941 /GB=CAB16475.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 21.1
(-0.3)
A 		9.1
(-2.3)
A 		41.1
(3)
A 		4.8
(-3)
A 		36
B 16.1
(-1.3)
A 		22.6
(-0.4)
A 		2.3
(-3)
A 		49.7
(3)
A 		47
C 35.1
(-0.4)
A 		10.9
(-3)
A 		11.6
(-2.9)
A 		67
(3)
P 		56
avr 24.1
(-0.7) 		14.2
(-3) 		18.3
(-2.1) 		40.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 992
1 2 3 4 5 6 range
A 3
(-3)
A 		11.1
(-2.9)
A 		30.4
(-2.8)
A 		3.4
(-3)
A 		779.5
(3)
P 		218.7
(-1.3)
P 		777
B 10.3
(-3)
A 		23.2
(-2.9)
A 		33.5
(-2.8)
A 		15.7
(-3)
A 		808.7
(3)
P 		174.4
(-1.8)
P 		798
C 9.7
(-3)
A 		16.5
(-2.9)
A 		29.5
(-2.9)
A 		6.6
(-3)
A 		994.9
(3)
P 		226.8
(-1.7)
P 		988
avr 7.7
(-3) 		16.9
(-2.9) 		31.1
(-2.8) 		8.6
(-3) 		861
(3) 		206.6
(-1.6) 		853
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.7
(1.2)
A 		2
(-2.2)
A 		10.7
(3)
A 		0.7
(-3)
A 		10
B 5.1
(-0.3)
A 		5.6
(0)
A 		0.5
(-3)
A 		10.6
(3)
A 		10
C 11.6
(3)
A 		3.1
(-3)
A 		4
(-2.4)
A 		11.3
(2.8)
P 		9
avr 8.1
(3) 		3.6
(-3) 		5.1
(-1) 		7.5
(2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 0.5
(-3)
A 		4
(-2.9)
A 		6.6
(-2.8)
A 		0.9
(-3)
A 		235.2
(3)
P 		53.3
(-1.7)
P 		235
B 3.6
(-3)
A 		7.7
(-2.9)
A 		8.1
(-2.9)
A 		4.2
(-3)
A 		328.5
(3)
P 		65
(-1.9)
P 		325
C 3.6
(-3)
A 		5
(-2.9)
A 		7.5
(-2.9)
A 		1.3
(-3)
A 		321.9
(3)
P 		75.9
(-1.6)
P 		321
avr 2.6
(-3) 		5.6
(-2.9) 		7.4
(-2.9) 		2.1
(-3) 		295.2
(3) 		64.7
(-1.7) 		293
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186281_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10146
Sequence Type Exemplar sequence
Representative Public ID Y45F10C.2 NCBI
Target Description Y45F10C.2 /REP_DB=WormBase Gene ID /WP=CE16636 /TR=O45941 /GB=CAB16475.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070236(11), NM_070238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070236 NCBI Caenorhabditis elegans C08F11.12 (C08F11.12) mRNA, complete cds. 11/11 None
NM_070238 NCBI Caenorhabditis elegans Y45F10C.2 (Y45F10C.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031587 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13662175:13662623:-1 11/11 None
GENEFINDER00000042612 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13649805:13652731:-1 11/11 None
C08F11.12 ENSEMBL cdna:known chromosome:CEL140:IV:13651016:13651479:-1 gene:C08F11.12 11/11 None
Y45F10C.2 ENSEMBL cdna:known chromosome:CEL140:IV:13662141:13662623:-1 gene:Y45F10C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13662180-13662629(-) 100.0 100.0
chrIV:13651021-13651470(-) 99.72 99.72
Public Domain and Genome References
Gene Title

Ensembl C08F11.12
Y45F10C.2
Entrez Gene 178333 Entrez gene
178334 Entrez gene
SwissProt Q9U3R0 EMBL-EBI
O45941 EMBL-EBI
WormBase CE17389 Wormbase
CE16636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16475 Hypothetical protein Y45F10C.2 [Caenorhabditis elegans] ref|NP_502639.1| Y45F10C.2 [Caenorhabditis elegans] 5.0E-63
blast CAB62779 Hypothetical protein C08F11.12 [Caenorhabditis elegans] ref|NP_502637.1| C08F11.12 [Caenorhabditis elegans] 6.0E-63
blast CAB16475 Hypothetical protein Y45F10C.2 [Caenorhabditis elegans] ref|NP_502639.1| Y45F10C.2 [Caenorhabditis elegans] 1.0E-62
blast CAB62779 Hypothetical protein C08F11.12 [Caenorhabditis elegans] ref|NP_502637.1| C08F11.12 [Caenorhabditis elegans] 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 3.4E-75
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 1.8E-76
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 3.4E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042612 4 33-50,65-87,212-234,259-281
Sequence
Target Sequence 
>C. ELEGANS:186281_S_AT
ttctcctctctgttacaattgctttggtgtctggatatccatcccaactccaaacaactt
gtgtcacaaaagctaaaagttgcaccatgttctttttaaatggagtatattgcaccgagt
gcacgtattctggaactcttgaactgaaaattggctcaacatgtactttttccatttacg
agaaaaaagtggcgagccagccaaatgaaaattcacaaaatgaagtagctcaatgcaaac
agtcatcatgctactcaaatcaatatgtaccagttgactgtgcggctgcttttggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTCTCTGTTACAATTGCTTT 500 693 38 Antisense
TTGGTGTCTGGATATCCATCCCAAC 490 707 61 Antisense
CCATCCCAACTCCAAACAACTTGTG 554 271 76 Antisense
AAGTTGCACCATGTTCTTTTTAAAT 581 147 114 Antisense
TGCACCGAGTGCACGTATTCTGGAA 28 579 148 Antisense
GCACGTATTCTGGAACTCTTGAACT 399 315 158 Antisense
GGCTCAACATGTACTTTTTCCATTT 701 537 190 Antisense
GGCGAGCCAGCCAAATGAAAATTCA 620 541 228 Antisense
GCAAACAGTCATCATGCTACTCAAA 310 319 272 Antisense
TGTACCAGTTGACTGTGCGGCTGCT 429 559 303 Antisense
TGACTGTGCGGCTGCTTTTGGAAAT 377 571 312 Antisense
Sequence Source Affymetrix Proprietary Database