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[186279_at]

Description C54A12.2 /REP_DB=WormBase Gene ID /WP=CE06977 /TR=Q18816 /GB=AAA68303.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      4grp_high_8_8 > 09      6grp_total > 21      4grp_total > 22      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 117.3
(3)
P 		71.3
(-2.2)
P 		63.8
(-3)
P 		106
(1.7)
P 		54
B 110.3
(1.2)
P 		69.3
(-2.7)
M 		65.9
(-3)
P 		129.1
(3)
A 		63
C 104.7
(3)
P 		63
(-3)
P 		82.4
(-0.2)
P 		93
(1.3)
M 		42
avr 110.8
(3) 		67.9
(-3) 		70.7
(-2.6) 		109.4
(2.8) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 106.7
(0.6)
P 		136
(3)
P 		121.2
(1.8)
P 		83.1
(-1.4)
P 		128.5
(2.4)
P 		64.2
(-3)
P 		72
B 98.6
(0.5)
P 		94.4
(0.1)
P 		128.4
(3)
A 		95
(0.2)
P 		57.1
(-3)
P 		62.4
(-2.6)
P 		71
C 83.3
(-2.3)
P 		150.5
(3)
P 		119.1
(0.5)
P 		132
(1.5)
P 		74.3
(-3)
P 		95.8
(-1.3)
P 		76
avr 96.2
(-0.5) 		127
(3) 		122.9
(2.5) 		103.4
(0.3) 		86.6
(-1.6) 		74.1
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 42.7
(3)
P 		15.5
(-3)
P 		16.7
(-2.7)
P 		15.5
(-3)
P 		27
B 35.2
(3)
P 		17.1
(-2.5)
M 		15.3
(-3)
P 		27.5
(0.7)
A 		20
C 34.7
(3)
P 		18.1
(-2.2)
P 		28.7
(1.1)
P 		15.7
(-3)
M 		19
avr 37.5
(3) 		16.9
(-3) 		20.2
(-2) 		19.6
(-2.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 19.7
(-2.3)
P 		48.4
(3)
P 		26.4
(-1)
P 		21.1
(-2)
P 		38.8
(1.2)
P 		15.6
(-3)
P 		33
B 34.3
(3)
P 		31.4
(1.4)
P 		31.2
(1.3)
A 		25.2
(-1.9)
P 		23.2
(-3)
P 		23.3
(-2.9)
P 		11
C 30.9
(-1.1)
P 		45.9
(3)
P 		30.3
(-1.3)
P 		26.5
(-2.3)
P 		24.1
(-3)
P 		32.1
(-0.8)
P 		22
avr 28.3
(-1.5) 		41.9
(3) 		29.3
(-1.2) 		24.3
(-2.8) 		28.7
(-1.4) 		23.7
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5308
Sequence Type Exemplar sequence
Representative Public ID C54A12.2 NCBI
Target Description C54A12.2 /REP_DB=WormBase Gene ID /WP=CE06977 /TR=Q18816 /GB=AAA68303.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062586 NCBI Caenorhabditis elegans C54A12.2 (C54A12.2) mRNA, complete cds. 11/11 None
SNAP00000020501 ENSEMBL cdna:SNAP chromosome:CEL140:II:5253406:5255473:-1 11/11 None
GENEFINDER00000020505 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5251095:5255503:-1 11/11 None
C54A12.2 ENSEMBL cdna:known chromosome:CEL140:II:5253406:5255797:-1 gene:C54A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5251425-5255795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54A12.2
Entrez Gene 183763 Entrez gene
SwissProt Q18816 EMBL-EBI
WormBase CE36809 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68303 Hypothetical protein C54A12.2 [Caenorhabditis elegans] ref|NP_494987.2| C54A12.2 [Caenorhabditis elegans] 0.0
blast AAA68303 Hypothetical protein C54A12.2 [Caenorhabditis elegans] ref|NP_494987.2| C54A12.2 [Caenorhabditis elegans] 1.0E-151
blast CAE59073 Hypothetical protein CBG02360 [Caenorhabditis briggsae] 1.0E-146
blast AAA68303 Hypothetical protein C54A12.2 [Caenorhabditis elegans] ref|NP_494987.2| C54A12.2 [Caenorhabditis elegans] 1.0E-146
blast CAE59073 Hypothetical protein CBG02360 [Caenorhabditis briggsae] 1.0E-144
blast CAE59073 Hypothetical protein CBG02360 [Caenorhabditis briggsae] 1.0E-139
blast AAN84821 Hypothetical protein F21C10.12 [Caenorhabditis elegans] ref|NP_872220.1| F21C10.12 [Caenorhabditis elegans] 3.0E-86
blast AAN84821 Hypothetical protein F21C10.12 [Caenorhabditis elegans] ref|NP_872220.1| F21C10.12 [Caenorhabditis elegans] 6.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.5E-8
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.5E-8
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.5E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494987.2 8 28-50,87-109,121-143,163-185,206-228,251-282,303-325,345-367
C54A12.2 8 28-50,87-109,121-143,163-185,206-228,251-282,303-325,345-367
SNAP00000020501 7 4-23,35-57,77-99,119-141,164-195,216-238,258-280
GENEFINDER00000020505 7 10-32,44-66,86-108,129-151,174-205,226-248,268-290
Sequence
Target Sequence 
>C. ELEGANS:186279_AT
gccatcatcactttcgcagtggttctgaattttgctcgattctttgaatttgaaattgaa
tacatcgatggtttggcattcttcagacgggatcttctggattctgagaaacattggtgg
tacttcatgttttatttcatcatcatttctattatattcgattatctcgttccatttgtg
atcatgtttgttgcgaatatgttgattatcagcgagctgagaagaacgaaaaaggaaaga
agtttgatgacaattcaacaacaaaaagagcaaaatacgacagtaatgcttctggttatc
acaattttctttggattctgccacttcttctcaatggccctaaagcttgcggagagtttt
gttggaaagtttctaacaattcagaatatttatctagaaatgcttggagaaatttttaac
tacctcattatcattcacaccgcctcaacatttttcatctattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATCATCACTTTCGCAGTGGTTC 324 281 646 Antisense
GCAGTGGTTCTGAATTTTGCTCGAT 675 311 661 Antisense
GGTTTGGCATTCTTCAGACGGGATC 580 505 715 Antisense
GTGGTACTTCATGTTTTATTTCATC 375 489 762 Antisense
GATTATCTCGTTCCATTTGTGATCA 586 429 805 Antisense
GACAGTAATGCTTCTGGTTATCACA 423 369 924 Antisense
ATTTTCTTTGGATTCTGCCACTTCT 214 15 949 Antisense
ACTTCTTCTCAATGGCCCTAAAGCT 36 103 968 Antisense
GGCCCTAAAGCTTGCGGAGAGTTTT 402 541 981 Antisense
TAACTACCTCATTATCATTCACACC 172 639 1062 Antisense
CGCCTCAACATTTTTCATCTATTAC 604 255 1086 Antisense
Sequence Source Affymetrix Proprietary Database