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[186278_at]

Description R06B10.3 /REP_DB=WormBase Gene ID /WP=CE26979 /TR=O44871 /GB=AAK21450.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 32      6grp_total > 41      4grp_total > 09      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2186
1 2 3 4 range
A 1368.2
(-3)
P 		1625.8
(-2.2)
P 		1568.2
(-2.4)
P 		3358.2
(3)
P 		1990
B 1171.8
(-3)
P 		1471.3
(-2.1)
P 		1477.2
(-2.1)
P 		3191.8
(3)
P 		2020
C 1226
(-3)
P 		1602.3
(-1.9)
P 		1653
(-1.8)
P 		3288.7
(3)
P 		2063
avr 1255.3
(-3) 		1566.5
(-2.1) 		1566.1
(-2.1) 		3279.6
(3) 		2024

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 1072.9
(0.3)
P 		963.6
(-0.7)
P 		1381.6
(3)
P 		1130.4
(0.8)
P 		805.2
(-2.1)
P 		702.3
(-3)
P 		679
B 1170
(1.3)
P 		1095.2
(0.5)
P 		1318
(3)
P 		1034.4
(-0.2)
P 		977.6
(-0.8)
P 		784.4
(-3)
P 		534
C 1053
(-0.1)
P 		991
(-1.1)
P 		1133
(1.2)
P 		1240
(3)
P 		895
(-2.7)
P 		875.7
(-3)
P 		364
avr 1098.6
(0.8) 		1016.6
(-0.2) 		1277.5
(3) 		1134.9
(1.3) 		892.6
(-1.7) 		787.5
(-3) 		490
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 338
1 2 3 4 range
A 498.2
(3)
P 		352.9
(-3)
P 		409.9
(-0.6)
P 		491.6
(2.7)
P 		145
B 373.7
(-2.4)
P 		363.4
(-2.6)
P 		342.3
(-3)
P 		680.2
(3)
P 		338
C 405.9
(-3)
P 		460.7
(-1.1)
P 		576.1
(3)
P 		554.5
(2.2)
P 		170
avr 425.9
(-1.9) 		392.3
(-3) 		442.8
(-1.3) 		575.4
(3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 197.8
(-2.1)
P 		342.7
(3)
P 		300.9
(1.5)
P 		286.7
(1)
P 		243
(-0.5)
P 		171
(-3)
P 		172
B 407.1
(3)
P 		364.6
(1.1)
P 		320
(-0.9)
P 		274
(-3)
P 		397.2
(2.6)
P 		292.5
(-2.2)
P 		133
C 390.3
(3)
P 		302.4
(-0.7)
P 		288.4
(-1.3)
P 		249.4
(-3)
P 		289.6
(-1.3)
P 		293.2
(-1.1)
P 		141
avr 331.7
(2.7) 		336.6
(3) 		303.1
(0.6) 		270
(-1.7) 		309.9
(1.1) 		252.2
(-3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186278_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8175
Sequence Type Exemplar sequence
Representative Public ID R06B10.3 NCBI
Target Description R06B10.3 /REP_DB=WormBase Gene ID /WP=CE26979 /TR=O44871 /GB=AAK21450.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064911 NCBI Caenorhabditis elegans R06B10.3 (R06B10.3) mRNA, complete cds. 11/11 None
R06B10.3 ENSEMBL cdna:known chromosome:CEL140:III:1002694:1006203:1 gene:R06B10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022060 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1002713-1005993(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06B10.3
Entrez Gene 175261 Entrez gene
SwissProt O44871 EMBL-EBI
WormBase CE26979 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21450 Hypothetical protein R06B10.3 [Caenorhabditis elegans] ref|NP_497312.1| R06B10.3 [Caenorhabditis elegans] 0.0
blast CAE69193 Hypothetical protein CBG15230 [Caenorhabditis briggsae] 1.0E-147
blast AAD51335 CD23 homolog [Ancylostoma ceylanicum] 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-16
Sequence
Target Sequence 
>C. ELEGANS:186278_AT
gctcaactgccggctattgcggagccatgcgtgctgcagatgcccgttggcaagcccagg
actgcactaagccttatccgttcttttgctatggaccggctctcggagcaccgacaaatc
ctccgaatacccccaagacaactcagaagcctgtgagaaatcaggaaaatatgataaaat
tcatggctgatgccgagtctgttggtgatccaaatgtcgacccaaatgctttgagctttt
acaataaggagcgggaatttatccgagcggtgacggattacctgtttgcaaacccgacca
gtgatggaaatacctgtctgtattatatgtcaccagctttttatggattcacccaatatg
agcaacaatttgacacgagcccagcatggagccactaccaatttgacaatctccttgagt
ccaacgtttggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAACTGCCGGCTATTGCGGAGC 58 301 365 Antisense
TGCTGCAGATGCCCGTTGGCAAGCC 620 581 396 Antisense
TTGGCAAGCCCAGGACTGCACTAAG 415 707 411 Antisense
ACTAAGCCTTATCCGTTCTTTTGCT 388 99 430 Antisense
GATGCCGAGTCTGTTGGTGATCCAA 315 415 553 Antisense
GTGATCCAAATGTCGACCCAAATGC 690 481 569 Antisense
GAGCGGTGACGGATTACCTGTTTGC 505 385 629 Antisense
GTTTGCAAACCCGACCAGTGATGGA 457 451 648 Antisense
CAACAATTTGACACGAGCCCAGCAT 618 189 727 Antisense
GCCACTACCAATTTGACAATCTCCT 514 279 755 Antisense
AATCTCCTTGAGTCCAACGTTTGGG 182 169 772 Antisense
Sequence Source Affymetrix Proprietary Database