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[186277_at]

Description C44C11.2 /REP_DB=WormBase Gene ID /WP=CE25814 /TR=O45057 /GB=AAK72296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 05      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 276
(-0.6)
P 		175.2
(-2.1)
P 		109.4
(-3)
P 		529.2
(3)
P 		420
B 269.1
(-0.7)
P 		114.7
(-3)
P 		139
(-2.6)
P 		512.9
(3)
P 		398
C 223.5
(-0.9)
P 		121.5
(-3)
P 		144.9
(-2.5)
P 		407.9
(3)
P 		286
avr 256.2
(-0.9) 		137.1
(-2.9) 		131.1
(-3) 		483.3
(3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 310.1
(3)
P 		298.8
(2.7)
P 		165.1
(-1.4)
P 		111.6
(-3)
P 		111.6
(-3)
P 		124.1
(-2.6)
P 		199
B 265.3
(3)
P 		243.7
(1.8)
P 		207
(-0.2)
P 		155.3
(-3)
P 		196.6
(-0.7)
P 		199.8
(-0.6)
P 		110
C 334.3
(3)
P 		205.8
(-0.7)
P 		124.2
(-3)
P 		147
(-2.3)
P 		147.3
(-2.3)
P 		135.2
(-2.7)
P 		210
avr 303.2
(3) 		249.4
(1) 		165.4
(-2) 		138
(-3) 		151.8
(-2.5) 		153
(-2.5) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 100.5
(3)
P 		38
(-2.2)
P 		28.6
(-3)
P 		77.5
(1.1)
P 		72
B 85.8
(1.3)
P 		28.3
(-3)
P 		32.2
(-2.7)
P 		109.3
(3)
P 		81
C 74
(3)
P 		34.9
(-3)
P 		50.5
(-0.6)
P 		68.8
(2.2)
P 		39
avr 86.8
(3) 		33.7
(-3) 		37.1
(-2.6) 		85.2
(2.8) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 57.2
(-0.8)
P 		106.3
(3)
P 		36
(-2.4)
P 		28.3
(-3)
P 		33.7
(-2.6)
P 		30.2
(-2.9)
P 		78
B 92.3
(3)
P 		81.1
(1.7)
P 		50.3
(-1.9)
P 		41.1
(-3)
P 		79.9
(1.5)
P 		74.5
(0.9)
P 		51
C 123.9
(3)
P 		62.8
(-0.9)
P 		31.6
(-2.9)
P 		29.6
(-3)
P 		47.7
(-1.8)
P 		45.3
(-2)
P 		94
avr 91.1
(3) 		83.4
(2.2) 		39.3
(-2.3) 		33
(-3) 		53.8
(-0.9) 		50
(-1.2) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3745
Sequence Type Exemplar sequence
Representative Public ID C44C11.2 NCBI
Target Description C44C11.2 /REP_DB=WormBase Gene ID /WP=CE25814 /TR=O45057 /GB=AAK72296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064220(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064220 NCBI Caenorhabditis elegans Suppressor of Pal-1 family member (sop-2) (sop-2) mRNA, complete cds. 10/11 None
SNAP00000019443 ENSEMBL cdna:SNAP chromosome:CEL140:II:12344038:12344313:1 10/11 None
GENEFINDER00000019447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12344029:12344313:1 11/11 None
C50E10.4 ENSEMBL cdna:known chromosome:CEL140:II:12339847:12344668:1 gene:C50E10.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12344025-12344310(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sop-2
Ensembl C50E10.4
Entrez Gene 174874 Entrez gene
SwissProt Q965H3 EMBL-EBI
WormBase CE32334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496621 Suppressor of Pal-1 family member (sop-2) [Caenorhabditis elegans] gb|AAK73863.2| Suppressor of pal-1 protein 2 [Caenorhabditis elegans] sp|Q965H3|SOP2_CAEEL Polycomb protein sop-2 (Suppressor of pal-1 protein 2) 0.0
blast T33498 hypothetical protein C50E10.4 - Caenorhabditis elegans 0.0
blast NP_496621 Suppressor of Pal-1 family member (sop-2) [Caenorhabditis elegans] gb|AAK73863.2| Suppressor of pal-1 protein 2 [Caenorhabditis elegans] sp|Q965H3|SOP2_CAEEL Polycomb protein sop-2 (Suppressor of pal-1 protein 2) 1.0E-47
blast B88331 protein C44C11.2 [imported] - Caenorhabditis elegans pir||T32954 hypothetical protein C44C11.2 - Caenorhabditis elegans (fragment) 1.0E-47
blast B88331 protein C44C11.2 [imported] - Caenorhabditis elegans pir||T32954 hypothetical protein C44C11.2 - Caenorhabditis elegans (fragment) 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:186277_AT
atgcttcaggcgcaagatctcatcaactgggttcggcttctcatcaccaacaacgtggat
tccactattgcaattatggttcgcgaggagtttgacggagaaacgctggcctgtcttgtg
ttggacgatgattttcgaaaagaggtaccaattccatatggtcattataagaagatgaag
atctatgggactgaggtgctcaaccattatcgtacggaaaagtatcaagctgatttgaga
aagttccatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCAGGCGCAAGATCTCATCA 436 43 13 Antisense
AGATCTCATCAACTGGGTTCGGCTT 659 65 27 Antisense
GCTTCTCATCACCAACAACGTGGAT 363 305 48 Antisense
ACGTGGATTCCACTATTGCAATTAT 209 95 65 Antisense
TTGCAATTATGGTTCGCGAGGAGTT 29 699 80 Antisense
TTGACGGAGAAACGCTGGCCTGTCT 478 677 104 Antisense
CTGGCCTGTCTTGTGTTGGACGATG 169 241 118 Antisense
GAGGTACCAATTCCATATGGTCATT 674 401 154 Antisense
AGATCTATGGGACTGAGGTGCTCAA 261 67 191 Antisense
AGGTGCTCAACCATTATCGTACGGA 346 57 206 Antisense
CAAGCTGATTTGAGAAAGTTCCATG 172 187 238 Antisense
Sequence Source Affymetrix Proprietary Database