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[186276_at]

Description F47C12.8 /REP_DB=WormBase Gene ID /WP=CE10684 /TR=Q20534 /GB=AAC24393.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.8
(-2.9)
A 		9.1
(3)
A 		8.2
(2.2)
A 		2.7
(-3)
A 		6
B 16.5
(3)
A 		6.8
(-1.4)
A 		6.6
(-1.5)
A 		3.3
(-3)
A 		13
C 5.8
(-3)
A 		7.4
(-0.2)
A 		9.2
(3)
A 		8.8
(2.3)
A 		3
avr 8.4
(3) 		7.8
(2) 		8
(2.3) 		4.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7.8
(-1.6)
A 		3.8
(-2.9)
A 		4.5
(-2.7)
A 		8.7
(-1.4)
A 		3.5
(-3)
A 		22.5
(3)
A 		19
B 2.8
(-3)
A 		19.4
(3)
A 		3
(-2.9)
A 		3.7
(-2.7)
A 		3.1
(-2.9)
A 		4.9
(-2.2)
A 		17
C 2.2
(-3)
A 		8.9
(-1.6)
A 		30.6
(3)
A 		5.9
(-2.2)
A 		14.2
(-0.5)
A 		4.4
(-2.5)
A 		28
avr 4.3
(-3) 		10.7
(1.6) 		12.7
(3) 		6.1
(-1.7) 		6.9
(-1.1) 		10.6
(1.5) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(-0.9)
A 		2
(2.6)
A 		2.1
(3)
A 		0.4
(-3)
A 		2
B 5.3
(3)
A 		1.7
(-1.7)
A 		1.5
(-2)
A 		0.7
(-3)
A 		5
C 1.9
(-1.6)
A 		2.1
(-0.9)
A 		3.2
(3)
A 		1.5
(-3)
A 		2
avr 2.7
(3) 		1.9
(0.3) 		2.3
(1.7) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		1.4
(-2.5)
A 		1
(-3)
A 		2.2
(-1.4)
A 		1.1
(-2.9)
A 		5.5
(3)
A 		5
B 1
(-2.7)
A 		6.4
(3)
A 		0.7
(-3)
A 		1
(-2.7)
A 		1.3
(-2.4)
A 		1.8
(-1.8)
A 		6
C 0.8
(-3)
A 		2.7
(-1.4)
A 		7.8
(3)
A 		1.2
(-2.7)
A 		4.6
(0.3)
A 		1.5
(-2.4)
A 		7
avr 1.1
(-3) 		3.5
(3) 		3.2
(2.3) 		1.5
(-2) 		2.3
(-0) 		2.9
(1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10999
Sequence Type Exemplar sequence
Representative Public ID F47C12.8 NCBI
Target Description F47C12.8 /REP_DB=WormBase Gene ID /WP=CE10684 /TR=Q20534 /GB=AAC24393.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068056 NCBI Caenorhabditis elegans F47C12.8 (F47C12.8) mRNA, complete cds. 11/11 None
GENEFINDER00000026890 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3993878:3998613:-1 10/11 None
F47C12.8 ENSEMBL cdna:known chromosome:CEL140:IV:3996296:3998601:-1 gene:F47C12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026886 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3996301-3998607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47C12.8
Entrez Gene 185920 Entrez gene
SwissProt Q20534 EMBL-EBI
WormBase CE10684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24393 Hypothetical protein F47C12.8 [Caenorhabditis elegans] ref|NP_500457.1| F47C12.8 [Caenorhabditis elegans] 1.0E-124
blast AAC24393 Hypothetical protein F47C12.8 [Caenorhabditis elegans] ref|NP_500457.1| F47C12.8 [Caenorhabditis elegans] 1.0E-103
blast AAC24392 Hypothetical protein F47C12.7 [Caenorhabditis elegans] ref|NP_500456.1| F47C12.7 [Caenorhabditis elegans] 7.0E-91
blast AAC24392 Hypothetical protein F47C12.7 [Caenorhabditis elegans] ref|NP_500456.1| F47C12.7 [Caenorhabditis elegans] 5.0E-22
blast AAC24391 Hypothetical protein F47C12.6 [Caenorhabditis elegans] ref|NP_500455.1| F47C12.6 [Caenorhabditis elegans] 6.0E-19
blast AAC24391 Hypothetical protein F47C12.6 [Caenorhabditis elegans] ref|NP_500455.1| F47C12.6 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.0E-126
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 5.3E-111
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 3.4E-115
Sequence
Target Sequence 
>C. ELEGANS:186276_AT
atttcctacgatttctaattccacttttcttagcttccatttgctgctccgacccagttc
attttgaggtctttatgcattgcgacccggcaatcaagcactggtgtggtacgctgtacg
tttatgaggaggacttcagcccaacccatgacgcagttgacacccagaaattctgcagct
ccgagtacaagaaacaaatcaaattttcagcgcacccaagaggggacatgagtctagtta
acattaagtgcgaaattcctaacatcaactggtgtgctgtgctctatgtctacgaagaag
atcatccgacgacgggacacgatgtgcagatagaaaaacatttttgtacgacaaaaagct
cccttcatcacaacgagacgaaaactcctggtggagacttccctacgccgaactacgagt
tttcttacgtactcaatcataattgtacttccgacggcgaagaaaaatgtgtgcacccta
ataaaacaactgatgtcaacgcatcgggagaacaatttgtcaagttcgacatcaatgcaa
gaccagactatccacgtcgctgtggttatccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCTACGATTTCTAATTCCACT 610 15 17 Antisense
TCCACTTTTCTTAGCTTCCATTTGC 15 589 36 Antisense
AGGTCTTTATGCATTGCGACCCGGC 646 53 83 Antisense
GACCCGGCAATCAAGCACTGGTGTG 700 379 100 Antisense
GACGCAGTTGACACCCAGAAATTCT 88 381 166 Antisense
AGAAATTCTGCAGCTCCGAGTACAA 510 71 182 Antisense
AATCAAATTTTCAGCGCACCCAAGA 469 171 213 Antisense
TCAACTGGTGTGCTGTGCTCTATGT 431 631 281 Antisense
TACGACAAAAAGCTCCCTTCATCAC 466 595 363 Antisense
ATCATAATTGTACTTCCGACGGCGA 595 29 452 Antisense
ATCCACGTCGCTGTGGTTATCCGAA 402 39 566 Antisense
Sequence Source Affymetrix Proprietary Database