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[186275_s_at]

Description Y47D3A.10 /REP_DB=WormBase Gene ID /WP=CE22040 /TR=Q9NAH2 /GB=CAB55070.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 17      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 6.7
(-2.2)
A 		2.3
(-3)
A 		10.9
(-1.4)
A 		35.5
(3)
A 		33
B 2.8
(-3)
A 		7.1
(0.1)
A 		11.2
(3)
A 		6
(-0.7)
A 		8
C 5
(-3)
A 		22
(3)
A 		4.9
(-3)
A 		19.1
(2)
A 		17
avr 4.8
(-3) 		10.5
(-0.8) 		9
(-1.4) 		20.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 30.1
(-2.3)
A 		2.4
(-3)
A 		2.5
(-3)
A 		2.8
(-3)
A 		169.7
(1.1)
P 		245
(3)
P 		243
B 3.4
(-3)
A 		3.7
(-3)
A 		2.4
(-3)
A 		22.5
(-2.5)
A 		190.5
(2)
P 		227.3
(3)
P 		225
C 3.7
(-3)
A 		6.5
(-2.9)
A 		3.9
(-3)
A 		3.7
(-3)
A 		149.6
(1.2)
P 		214.2
(3)
P 		211
avr 12.4
(-2.7) 		4.2
(-3) 		2.9
(-3) 		9.7
(-2.8) 		169.9
(1.4) 		228.8
(3) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.5
(-0.4)
A 		0.5
(-3)
A 		2.9
(0.1)
A 		5.2
(3)
A 		5
B 0.9
(-3)
A 		1.7
(-0.2)
A 		2.6
(3)
A 		1.3
(-1.6)
A 		2
C 1.7
(-3)
A 		6.3
(3)
A 		1.7
(-3)
A 		3.2
(-1)
A 		5
avr 1.7
(-3) 		2.8
(1.4) 		2.4
(-0.2) 		3.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 5.5
(-2.5)
A 		0.9
(-3)
A 		0.5
(-3)
A 		0.7
(-3)
A 		51.2
(2.1)
P 		59.6
(3)
P 		59
B 1.2
(-3)
A 		1.2
(-3)
A 		0.6
(-3)
A 		6
(-2.6)
A 		77.4
(2.5)
P 		84.8
(3)
P 		84
C 1.4
(-2.9)
A 		2
(-2.9)
A 		1
(-3)
A 		0.7
(-3)
A 		48.4
(1)
P 		71.7
(3)
P 		71
avr 2.7
(-2.8) 		1.4
(-2.9) 		0.7
(-3) 		2.5
(-2.8) 		59
(1.9) 		72
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186275_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6252
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.10 NCBI
Target Description Y47D3A.10 /REP_DB=WormBase Gene ID /WP=CE22040 /TR=Q9NAH2 /GB=CAB55070.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067040 NCBI Caenorhabditis elegans T BoX family member (tbx-34) (tbx-34) mRNA, complete cds. 11/11 None
SNAP00000007209 ENSEMBL cdna:SNAP chromosome:CEL140:III:11216324:11218121:-1 11/11 None
GENEFINDER00000007262 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11216324:11218121:-1 11/11 None
Y47D3A.10 ENSEMBL cdna:known chromosome:CEL140:III:11216324:11218121:-1 gene:Y47D3A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11216319-11218117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-34
Ensembl Y47D3A.10
Entrez Gene 176549 Entrez gene
SwissProt Q9NAH2 EMBL-EBI
WormBase CE22040 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55070 Hypothetical protein Y47D3A.10 [Caenorhabditis elegans] ref|NP_499441.1| T BoX family member (tbx-34) [Caenorhabditis elegans] sp|Q9NAH2|TBX34_CAEEL Putative T-box protein 1.0E-164
blast CAE73583 Hypothetical protein CBG21060 [Caenorhabditis briggsae] 9.0E-67
blast CAE67634 Hypothetical protein CBG13191 [Caenorhabditis briggsae] 2.0E-64
Sequence
Target Sequence 
>C. ELEGANS:186275_S_AT
gacaagttgctcatcacacgtgaattcaatgatattcagcgaaatgtgatccacgtggag
ccgaatcacaagtacattcccgtcctgaccatccaaaacgtcaccacaggaaaatcgacg
gaattccagttccaacaaatggaattcatcgccgtcaagtcctaccaatcggcgcgaatt
cgccacacaaaacgtgcaccgcgaaagatgaatcttgctccgggtagttcgcagaagcca
caactcattgtaccggacattctccactcgcccacctatggcttcaccgcggcgccacca
ccgttcccgttcgagtactggcttttgtacccacaaattcaatatcagattcagcagctc
gcgtactcacttccaatgggaccaccgatggttccaattcaccatattcaatgcactgag
gcttctcagcgtgtctatgctccagagtacggatggaattcgattcttatgccgggagct
cacaaagagcaagatgatcattacatgtttcaccatgaaatttgggcaccgcaggaccac
gaactcgagaagctgcatgtgctcactgaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGTTGCTCATCACACGTGAAT 496 365 319 Antisense
TGGAATTCATCGCCGTCAAGTCCTA 519 545 458 Antisense
ACCAATCGGCGCGAATTCGCCACAC 254 85 482 Antisense
AATCTTGCTCCGGGTAGTTCGCAGA 643 169 529 Antisense
GAAGCCACAACTCATTGTACCGGAC 68 343 552 Antisense
TCCCGTTCGAGTACTGGCTTTTGTA 564 597 623 Antisense
TATCAGATTCAGCAGCTCGCGTACT 619 659 661 Antisense
ATGGGACCACCGATGGTTCCAATTC 606 1 694 Antisense
TCTCAGCGTGTCTATGCTCCAGAGT 458 613 742 Antisense
GGAATTCGATTCTTATGCCGGGAGC 521 533 773 Antisense
GAAGCTGCATGTGCTCACTGAACAG 647 341 867 Antisense
Sequence Source Affymetrix Proprietary Database