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[186274_at]

Description C17H11.1 /REP_DB=WormBase Gene ID /WP=CE08289 /TR=P91064 /GB=AAB37982.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 25      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 25      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 246.9
(3)
P 		40.8
(-3)
P 		60.7
(-2.4)
P 		116.9
(-0.8)
P 		206
B 218.4
(3)
P 		69.3
(-2.5)
P 		54.3
(-3)
P 		107.9
(-1)
P 		164
C 200.2
(3)
P 		49.5
(-3)
P 		62.2
(-2.5)
P 		90.4
(-1.4)
P 		151
avr 221.8
(3) 		53.2
(-3) 		59.1
(-2.8) 		105.1
(-1.2) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 93.8
(0)
P 		119.6
(3)
P 		82.7
(-1.2)
P 		74.8
(-2.1)
P 		67.4
(-3)
P 		80.2
(-1.5)
P 		52
B 153.4
(3)
P 		151.6
(2.9)
P 		79.8
(-1.7)
P 		67
(-2.6)
P 		70.6
(-2.3)
P 		60.3
(-3)
P 		93
C 188.7
(3)
P 		132.5
(0.6)
P 		76.5
(-1.8)
P 		86.9
(-1.3)
P 		47.5
(-3)
P 		79.5
(-1.6)
P 		141
avr 145.3
(3) 		134.6
(2.2) 		79.7
(-1.7) 		76.2
(-2) 		61.8
(-3) 		73.3
(-2.2) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 89.9
(3)
P 		8.9
(-3)
P 		15.9
(-2.5)
P 		17.1
(-2.4)
P 		81
B 69.6
(3)
P 		17.1
(-2.5)
P 		12.6
(-3)
P 		23
(-1.9)
P 		57
C 66.3
(3)
P 		14.2
(-3)
P 		21.7
(-2.1)
P 		15.2
(-2.9)
P 		52
avr 75.3
(3) 		13.4
(-3) 		16.7
(-2.7) 		18.4
(-2.5) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 17.3
(-3)
P 		42.5
(3)
P 		18
(-2.8)
P 		19
(-2.6)
P 		20.3
(-2.3)
P 		19.5
(-2.5)
P 		25
B 53.4
(3)
P 		50.5
(2.5)
P 		19.4
(-2.7)
P 		17.7
(-3)
P 		28.7
(-1.2)
P 		22.5
(-2.2)
P 		36
C 70
(3)
P 		40.4
(-0.3)
P 		19.5
(-2.5)
P 		17.5
(-2.8)
P 		15.4
(-3)
P 		26.6
(-1.8)
P 		55
avr 46.9
(3) 		44.5
(2.5) 		19
(-2.8) 		18.1
(-3) 		21.5
(-2.3) 		22.9
(-2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16207
Sequence Type Exemplar sequence
Representative Public ID C17H11.1 NCBI
Target Description C17H11.1 /REP_DB=WormBase Gene ID /WP=CE08289 /TR=P91064 /GB=AAB37982.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076978 NCBI Caenorhabditis elegans C17H11.1 (C17H11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009236 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8178567:8180748:1 11/11 None
C17H11.1 ENSEMBL cdna:known chromosome:CEL140:X:8173849:8180804:1 gene:C17H11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009208 1/11 Cross Hyb Matching Probes None
SNAP00000009209 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8178565-8180747(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H11.1
Entrez Gene 181075 Entrez gene
SwissProt P91064 EMBL-EBI
WormBase CE29584 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37982 Hypothetical protein C17H11.1 [Caenorhabditis elegans] ref|NP_509379.1| C17H11.1 [Caenorhabditis elegans] 0.0
blast CAE74854 Hypothetical protein CBG22705 [Caenorhabditis briggsae] 1.0E-134
blast CAE74854 Hypothetical protein CBG22705 [Caenorhabditis briggsae] 1.0E-131
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509379.1 7 7-26,53-75,96-118,128-150,170-187,225-242,300-322
C17H11.1 7 7-26,53-75,96-118,128-150,170-187,225-242,300-322
GENEFINDER00000009236 6 26-48,69-91,101-123,143-160,198-215,273-295
Sequence
Target Sequence 
>C. ELEGANS:186274_AT
gatttgtgtgattttcttgctaggaaatgttcctcaaattgtcgtgatgatactgcaaaa
cgaggccatggagactaatttcaactttcaactttatcgtcattgctcaaacactttaga
agtgctgaatcattgtctcaatttttatgtcttctgcattgctagctcggaatacacaag
ggcatttcttctgaattgcaactgtctgcagaatatgatgtacagatttcctagaattgc
aagatttgtgagtaggagaagaagcagcagtgtgatggtgagttccggtggatttggagt
tgcaaaccgagaatacttgagcatggaatcagtccaggaggaacaaaagaaatgggttgt
tgatccaagcacaagcccatactctcaaacggattccaatttgagaagtattttggtaac
aggtgctcgtgaacctcgacagaaaaaatcactcacaattgtaaaccattgcgccgtaga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGTGTGATTTTCTTGCTAGGA 651 427 843 Antisense
GGAGACTAATTTCAACTTTCAACTT 681 515 912 Antisense
CTTTCAACTTTATCGTCATTGCTCA 241 221 927 Antisense
TATGTCTTCTGCATTGCTAGCTCGG 538 655 988 Antisense
GCTAGCTCGGAATACACAAGGGCAT 645 301 1003 Antisense
AAGGGCATTTCTTCTGAATTGCAAC 591 159 1020 Antisense
GCAGTGTGATGGTGAGTTCCGGTGG 416 311 1109 Antisense
TGTTGATCCAAGCACAAGCCCATAC 275 563 1200 Antisense
CAAGCCCATACTCTCAAACGGATTC 451 185 1214 Antisense
GTAACAGGTGCTCGTGAACCTCGAC 305 461 1258 Antisense
AATTGTAAACCATTGCGCCGTAGAA 98 177 1299 Antisense
Sequence Source Affymetrix Proprietary Database