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[186273_at]

Description R07C12.1 /REP_DB=WormBase Gene ID /WP=CE17204 /TR=O44525 /GB=AAB94150.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 06      6grp_total > 96      4grp_total > 10      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 47.2
(-3)
P 		62.6
(-2.8)
P 		51
(-2.9)
P 		462.9
(3)
P 		416
B 44.3
(-3)
P 		89.3
(-2.4)
P 		44.1
(-3)
M 		513.2
(3)
P 		469
C 58.6
(-3)
P 		62.6
(-2.9)
P 		56.1
(-3)
P 		419.8
(3)
P 		364
avr 50
(-3) 		71.5
(-2.7) 		50.4
(-3) 		465.3
(3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 972
1 2 3 4 5 6 range
A 35.3
(-3)
A 		116
(-2.5)
P 		55
(-2.9)
P 		566.6
(0.3)
P 		607.9
(0.5)
P 		1007.7
(3)
P 		972
B 82.1
(-3)
P 		104.7
(-2.8)
P 		102.9
(-2.8)
P 		402.2
(-0.6)
P 		718.7
(1.8)
P 		884
(3)
P 		802
C 61.1
(-3)
P 		107.4
(-2.7)
P 		93.4
(-2.8)
P 		454.3
(-0.4)
P 		592.7
(0.5)
P 		964.5
(3)
P 		903
avr 59.5
(-3) 		109.4
(-2.7) 		83.8
(-2.8) 		474.4
(-0.2) 		639.8
(0.9) 		952.1
(3) 		893
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 17.2
(-2.6)
P 		13.6
(-3)
P 		13.3
(-3)
P 		67.8
(3)
P 		55
B 14.1
(-2.8)
P 		22
(-2.3)
P 		10.2
(-3)
M 		109.4
(3)
P 		99
C 19.4
(-2.8)
P 		18
(-3)
P 		19.6
(-2.8)
P 		70.8
(3)
P 		53
avr 16.9
(-2.8) 		17.9
(-2.7) 		14.4
(-3) 		82.7
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 6.5
(-3)
A 		41.3
(-2.1)
P 		12
(-2.9)
P 		143.7
(0.4)
P 		183.4
(1.4)
P 		245.3
(3)
P 		239
B 28.6
(-2.9)
P 		34.8
(-2.8)
P 		25
(-3)
P 		106.5
(-1.4)
P 		292
(2.3)
P 		329.6
(3)
P 		305
C 22.6
(-3)
P 		32.8
(-2.8)
P 		23.8
(-3)
P 		91.4
(-1.6)
P 		191.8
(0.4)
P 		322.9
(3)
P 		300
avr 19.2
(-3) 		36.3
(-2.6) 		20.3
(-3) 		113.9
(-1) 		222.4
(1.4) 		299.3
(3) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10465
Sequence Type Exemplar sequence
Representative Public ID R07C12.1 NCBI
Target Description R07C12.1 /REP_DB=WormBase Gene ID /WP=CE17204 /TR=O44525 /GB=AAB94150.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068096 NCBI Caenorhabditis elegans R07C12.1 (R07C12.1) mRNA, complete cds. 11/11 None
R07C12.1 ENSEMBL cdna:known chromosome:CEL140:IV:4152540:4154022:1 gene:R07C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4152545-4154028(+) 96.94 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C12.1
Entrez Gene 177179 Entrez gene
SwissProt O44525 EMBL-EBI
WormBase CE17204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94150 Hypothetical protein R07C12.1 [Caenorhabditis elegans] ref|NP_500497.1| R07C12.1 [Caenorhabditis elegans] 0.0
blast AAA98026 Hypothetical protein K08D10.10 [Caenorhabditis elegans] ref|NP_500498.1| K08D10.10 [Caenorhabditis elegans] 1.0E-130
blast AAB94152 Hypothetical protein R07C12.3 [Caenorhabditis elegans] ref|NP_500494.1| R07C12.3 [Caenorhabditis elegans] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:186273_AT
tgcggctctattgttgtaattctctcaaagcgaaatccaaatgaaaatgacattaccaat
ctagtgactaaagttcgatcgcatcatggaatggttcatgtaatttcatcaaatactcca
tcaggtggatctcaaccacttaccctctatgacctctcatctaaaacaaatggattaacc
gattttcgaaatgatgatcaattctacaattctcaaattcgttctgttgggctattttgg
cctgtagtcctttacgcggtaaatacagttgtgtccggcaatggctccactgtactgcct
ccgctattacaaccttgccagttacctaatggagccaactttgcagttactgtacaaaat
catggtccgattgatacattccaatcatttcatctctcttggtacaatgcttcttcaact
tctaatggtggttttcatggatataactcttattttgagaaaaatagcacaattcgaaca
ggtggttatactcttgatgctgctatctacaacatgacccttgactactcatattcggac
aatacgcttatcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGCTCTATTGTTGTAATTCTCT 43 583 412 Antisense
GTGACTAAAGTTCGATCGCATCATG 214 483 475 Antisense
ATTCTCAAATTCGTTCTGTTGGGCT 703 9 620 Antisense
TATTTTGGCCTGTAGTCCTTTACGC 84 663 644 Antisense
CCGCTATTACAACCTTGCCAGTTAC 57 255 712 Antisense
TTGCCAGTTACCTAATGGAGCCAAC 576 699 726 Antisense
ATGGAGCCAACTTTGCAGTTACTGT 89 53 740 Antisense
GTTACTGTACAAAATCATGGTCCGA 618 445 757 Antisense
GGTGGTTATACTCTTGATGCTGCTA 581 499 892 Antisense
GACCCTTGACTACTCATATTCGGAC 710 381 927 Antisense
TATTCGGACAATACGCTTATCAAGA 493 659 943 Antisense
Sequence Source Affymetrix Proprietary Database