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[186272_at]

Description ZK1240.8 /REP_DB=WormBase Gene ID /WP=CE15541 /TR=O16683 /GB=AAB66144.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 27
(-1.1)
A 		12.5
(-3)
A 		53.1
(2.4)
A 		57.8
(3)
A 		45
B 51.7
(3)
A 		43.8
(0.1)
A 		35.2
(-3)
A 		45
(0.6)
A 		17
C 61.3
(2.7)
A 		29.3
(-3)
A 		46.4
(0.1)
A 		62.7
(3)
M 		33
avr 46.7
(1.1) 		28.5
(-3) 		44.9
(0.7) 		55.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 39
(0.2)
A 		26.5
(-3)
P 		30
(-2.1)
M 		49.8
(3)
A 		36.7
(-0.4)
A 		47.1
(2.3)
A 		23
B 31.4
(-3)
P 		82
(3)
P 		46.9
(-1.2)
A 		45
(-1.4)
A 		50
(-0.8)
A 		34.3
(-2.7)
A 		51
C 28.7
(-3)
A 		84.2
(3)
P 		31
(-2.8)
A 		72.8
(1.8)
A 		33.9
(-2.4)
M 		38.8
(-1.9)
A 		56
avr 33
(-3) 		64.2
(3) 		36
(-2.4) 		55.9
(1.4) 		40.2
(-1.6) 		40.1
(-1.6) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.8
(0.8)
A 		2.7
(-3)
A 		13.9
(3)
A 		8.5
(0.1)
A 		11
B 16.5
(3)
A 		10.8
(-1.1)
A 		8.1
(-3)
A 		9.6
(-1.9)
A 		8
C 20.3
(3)
A 		8.4
(-3)
A 		16.2
(0.9)
A 		10.6
(-1.9)
M 		12
avr 15.5
(3) 		7.3
(-3) 		12.7
(1) 		9.6
(-1.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.2
(-2.3)
A 		9.4
(-0.1)
P 		6.5
(-3)
M 		12.6
(3)
A 		11.1
(1.5)
A 		11.5
(1.9)
A 		6
B 10.9
(-3)
P 		27.3
(3)
P 		11.4
(-2.8)
A 		11.9
(-2.6)
A 		20.3
(0.4)
A 		12.8
(-2.3)
A 		16
C 10.6
(-2.1)
A 		25.7
(3)
P 		7.9
(-3)
A 		14.6
(-0.7)
A 		11
(-2)
M 		13
(-1.3)
A 		18
avr 9.6
(-2.5) 		20.8
(3) 		8.6
(-3) 		13
(-0.8) 		14.1
(-0.3) 		12.4
(-1.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5784
Sequence Type Exemplar sequence
Representative Public ID ZK1240.8 NCBI
Target Description ZK1240.8 /REP_DB=WormBase Gene ID /WP=CE15541 /TR=O16683 /GB=AAB66144.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061841 NCBI Caenorhabditis elegans ZK1240.8 (ZK1240.8) mRNA, complete cds. 11/11 None
SNAP00000039227 ENSEMBL cdna:SNAP chromosome:CEL140:II:2323533:2329053:-1 11/11 None
GENEFINDER00000039229 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2326996:2329053:-1 11/11 None
ZK1240.8 ENSEMBL cdna:known chromosome:CEL140:II:2326996:2329053:-1 gene:ZK1240.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2326994-2329052(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1240.8
Entrez Gene 191542 Entrez gene
SwissProt O16683 EMBL-EBI
WormBase CE15541 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66144 Hypothetical protein ZK1240.8 [Caenorhabditis elegans] ref|NP_494242.1| ZK1240.8 [Caenorhabditis elegans] 1.0E-156
blast AAB66144 Hypothetical protein ZK1240.8 [Caenorhabditis elegans] ref|NP_494242.1| ZK1240.8 [Caenorhabditis elegans] 1.0E-146
blast AAL11109 Hypothetical protein ZK1240.3 [Caenorhabditis elegans] ref|NP_494239.2| ZK1240.3 [Caenorhabditis elegans] 2.0E-63
blast AAL11109 Hypothetical protein ZK1240.3 [Caenorhabditis elegans] ref|NP_494239.2| ZK1240.3 [Caenorhabditis elegans] 9.0E-57
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.5E-7
Sequence
Target Sequence 
>C. ELEGANS:186272_AT
aactcaccgccaaagtgcaaagagcatcgatataatattgcggagtttttgtgcagtgag
cacgactgtccctcaatcgacaaactaatgtgtaggacttgcgaggagtttggagttcat
acaggtcatacaaaagttttgatgagtgtagaagctggaaaaattagagatgtactggaa
tgcaggctgaaacagatgaaattgaatgctgaatcattcacagtgcagctagaagaattt
agagaagctatgtcaaatagacaactttttattgaaaagctttcggagataaaatatcat
ttcagtagaatccgtcaattggttgatgaaagggaaaagaggattacagataaattaact
tttaatacgacagaaatatacaagtgcaataaggaaactgaatccaatatgaaacgtttg
caggattgtcttcttgagaaaattgagcaaacaacgaagttctcaaaaattagtgattat
cagttactccaagccgacattgatctaggaggactgacttggtaccatagccctattact
cagaaattctccccggctgacacaaagactatggatgttaaactaccagctttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCACCGCCAAAGTGCAAAGAGC 81 141 262 Antisense
TTGTGCAGTGAGCACGACTGTCCCT 254 707 310 Antisense
CTGAATCATTCACAGTGCAGCTAGA 521 237 470 Antisense
ACGTTTGCAGGATTGTCTTCTTGAG 403 93 675 Antisense
TTATCAGTTACTCCAAGCCGACATT 390 679 738 Antisense
AGCCGACATTGATCTAGGAGGACTG 330 83 753 Antisense
AGGAGGACTGACTTGGTACCATAGC 182 55 768 Antisense
GGTACCATAGCCCTATTACTCAGAA 640 503 782 Antisense
TTACTCAGAAATTCTCCCCGGCTGA 579 681 797 Antisense
TCCCCGGCTGACACAAAGACTATGG 632 595 811 Antisense
GGATGTTAAACTACCAGCTTTCAAA 422 513 834 Antisense
Sequence Source Affymetrix Proprietary Database