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[186271_at]

Description Y48C3A.17 /REP_DB=WormBase Gene ID /WP=CE24382 /TR=Q9U289 /GB=CAB60421.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 45      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 5.8
(-3)
A 		33.6
(3)
A 		20
(0.1)
A 		21.1
(0.3)
A 		28
B 36.1
(3)
A 		16.1
(-1.2)
A 		16.7
(-1.1)
A 		7.8
(-3)
A 		28
C 48.2
(3)
A 		14.6
(-2.4)
A 		10.8
(-3)
A 		11.5
(-2.9)
A 		37
avr 30
(3) 		21.4
(-0.1) 		15.8
(-2.2) 		13.5
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 85.3
(3)
A 		7.5
(-3)
A 		15.6
(-2.4)
A 		10.1
(-2.8)
A 		11.1
(-2.7)
A 		12.6
(-2.6)
A 		78
B 65.3
(3)
A 		22.8
(-1.2)
A 		59.2
(2.4)
A 		33.4
(-0.2)
A 		12.4
(-2.2)
A 		4.6
(-3)
A 		61
C 11.3
(-2.7)
A 		95.2
(3)
A 		7.6
(-2.9)
A 		17.7
(-2.2)
A 		6.6
(-3)
A 		46.8
(-0.3)
A 		89
avr 54
(3) 		41.8
(1.3) 		27.5
(-0.6) 		20.4
(-1.6) 		10
(-3) 		21.3
(-1.5) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.1
(-3)
A 		7.3
(3)
A 		5.2
(0.6)
A 		3.1
(-1.8)
A 		5
B 11.5
(3)
A 		4
(-1.6)
A 		3.9
(-1.7)
A 		1.7
(-3)
A 		10
C 15.9
(3)
A 		4.2
(-2)
A 		3.8
(-2.2)
A 		1.9
(-3)
A 		14
avr 9.8
(3) 		5.2
(-0.6) 		4.3
(-1.3) 		2.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.7
(3)
A 		2.7
(-3)
A 		3.4
(-2.6)
A 		2.6
(-3)
A 		3.3
(-2.7)
A 		3.1
(-2.8)
A 		13
B 22.7
(3)
A 		7.6
(-1.3)
A 		14.4
(0.6)
A 		8.9
(-0.9)
A 		5
(-2.1)
A 		1.7
(-3)
A 		21
C 4.2
(-2.5)
A 		29
(3)
A 		1.9
(-3)
A 		3.6
(-2.6)
A 		2.1
(-3)
A 		15.7
(0.1)
A 		27
avr 14.2
(3) 		13.1
(2.4) 		6.6
(-1.3) 		5
(-2.2) 		3.5
(-3) 		6.8
(-1.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3923
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.17 NCBI
Target Description Y48C3A.17 /REP_DB=WormBase Gene ID /WP=CE24382 /TR=Q9U289 /GB=CAB60421.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064424 NCBI Caenorhabditis elegans E2F-like (mammalian transcription factor) family member (efl-2) (efl-2) mRNA, complete cds. 11/11 None
GENEFINDER00000006670 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13405590:13412171:1 11/11 None
Y48C3A.17 ENSEMBL cdna:known chromosome:CEL140:II:13406056:13411176:1 gene:Y48C3A.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AY028167 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13406052-13411173(+) 99.6 100.0
Public Domain and Genome References
Gene Title
Gene Symbol efl-2
Ensembl Y48C3A.17
Entrez Gene 174980 Entrez gene
SwissProt Q9U289 EMBL-EBI
WormBase CE24382 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5667 transcription factor complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60421 Hypothetical protein Y48C3A.17 [Caenorhabditis elegans] ref|NP_496825.3| E2F-like (mammalian transcription factor) family member (efl-2) [Caenorhabditis elegans] 0.0
blast T31602 hypothetical protein Y48C3A.t - Caenorhabditis elegans 0.0
blast T31602 hypothetical protein Y48C3A.t - Caenorhabditis elegans 1.0E-155
blast CAB60421 Hypothetical protein Y48C3A.17 [Caenorhabditis elegans] ref|NP_496825.3| E2F-like (mammalian transcription factor) family member (efl-2) [Caenorhabditis elegans] 1.0E-152
blast AAK19023 EFL-2 [Caenorhabditis elegans] 1.0E-139
blast AAK19023 EFL-2 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR003316 EMBL-EBI Transcription factor E2F/dimerisation partner (TDP) 2.8E-11
Pfam IPR003316 EMBL-EBI Transcription factor E2F/dimerisation partner (TDP) 2.8E-11
Sequence
Target Sequence 
>C. ELEGANS:186271_AT
tgctcttcacaaatgatccgccagagtacggcgatgaggaggacgaggacgatgtgaaaa
aattatcatcacaaaaaagatttgagacatctgaagcattacgtgtaaccctagctgaaa
tgctaacagatcccacaacaatctcatcatcaccaaaacacatcaaattagaagaaccgg
aggaaattgataccgaggatttggaaacttttgcccccccggaattttccgaaaataagt
ggtcacaaaaaatagggggcgggcttgccattttgtgggcgtggcttgctcttatgcccc
gcccacaaaatgggaactttttttcggcaaaatttttcaaattctttccagaaacagtcg
cccgaaaaacctttgtgctccctccatccacatcagcttcacaatcaaatgctccatatc
taccagaaactccaggccgtgggctctttttcagtccattcaagtcacttatcgatccgt
gtattctgccgagtttctccgatgatctgacaagtggttatattaatattacgacaccgt
cgagagccactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTTCACAAATGATCCGCCAGA 303 581 629 Antisense
GCATTACGTGTAACCCTAGCTGAAA 523 307 724 Antisense
AATCTCATCATCACCAAAACACATC 273 169 768 Antisense
AATAGGGGGCGGGCTTGCCATTTTG 431 173 879 Antisense
TTCTTTCCAGAAACAGTCGCCCGAA 621 687 970 Antisense
ATCCACATCAGCTTCACAATCAAAT 641 39 1014 Antisense
ATATCTACCAGAAACTCCAGGCCGT 440 15 1044 Antisense
GCTCTTTTTCAGTCCATTCAAGTCA 683 299 1071 Antisense
AAGTCACTTATCGATCCGTGTATTC 458 157 1090 Antisense
TATTCTGCCGAGTTTCTCCGATGAT 672 663 1110 Antisense
ATTACGACACCGTCGAGAGCCACTG 576 11 1156 Antisense
Sequence Source Affymetrix Proprietary Database