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[186268_s_at]

Description Y45F10C.1 /REP_DB=WormBase Gene ID /WP=CE16635 /TR=O45943 /GB=CAB16477.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 4.4
(-2.6)
A 		2.8
(-3)
A 		8.9
(-1.6)
A 		29.8
(3)
A 		27
B 0.6
(-3)
A 		2
(1.4)
A 		1.5
(-0.2)
A 		2.5
(3)
A 		2
C 0.7
(-2.9)
A 		8.4
(3)
A 		0.6
(-3)
A 		2.6
(-1.5)
A 		8
avr 1.9
(-3) 		4.4
(-1.5) 		3.7
(-1.9) 		11.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.5
(0.3)
A 		1.1
(-2.8)
A 		1.6
(-1.7)
A 		1
(-3)
A 		1.3
(-2.3)
A 		3.7
(3)
A 		3
B 0.8
(-2.6)
A 		1.3
(-1.4)
A 		1.1
(-1.9)
A 		0.6
(-3)
A 		1.7
(-0.6)
A 		3.3
(3)
A 		3
C 2.8
(2.5)
A 		3
(3)
A 		1.1
(-1.6)
A 		1.5
(-0.6)
A 		1.7
(-0.1)
A 		0.5
(-3)
A 		3
avr 2
(1) 		1.8
(0.2) 		1.3
(-1.8) 		1
(-3) 		1.6
(-0.6) 		2.5
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.6
(-1.4)
A 		0.6
(-3)
A 		2.3
(-0.3)
A 		4.4
(3)
A 		4
B 0.2
(-3)
A 		0.5
(3)
A 		0.4
(1)
A 		0.5
(3)
A 		0
C 0.2
(-3)
A 		2.4
(3)
A 		0.2
(-3)
A 		0.4
(-2.5)
A 		2
avr 0.7
(-3) 		1.2
(-0.3) 		1
(-1.4) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-1)
A 		0.4
(-2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.4
(-2)
A 		0.9
(3)
A 		1
B 0.3
(-2.4)
A 		0.4
(-1.8)
A 		0.3
(-2.4)
A 		0.2
(-3)
A 		0.7
(-0)
A 		1.2
(3)
A 		1
C 1
(3)
A 		0.9
(2.3)
A 		0.3
(-2.3)
A 		0.3
(-2.3)
A 		0.6
(-0)
A 		0.2
(-3)
A 		1
avr 0.6
(0.6) 		0.6
(0.6) 		0.3
(-3) 		0.3
(-3) 		0.6
(0.6) 		0.8
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186268_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9948
Sequence Type Exemplar sequence
Representative Public ID Y45F10C.1 NCBI
Target Description Y45F10C.1 /REP_DB=WormBase Gene ID /WP=CE16635 /TR=O45943 /GB=CAB16477.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070266(11), NM_070237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070266 NCBI Caenorhabditis elegans B0513.6 (B0513.6) mRNA, complete cds. 11/11 A 
NM_070237 NCBI Caenorhabditis elegans Y45F10C.1 (Y45F10C.1) mRNA, complete cds. 11/11 A 
SNAP00000026157 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13854324:13857320:1 11/11 None
GENEFINDER00000026169 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13854324:13857320:1 11/11 None
SNAP00000031584 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13656382:13659516:-1 11/11 None
GENEFINDER00000031588 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13656382:13659516:-1 11/11 None
Y45F10C.1 ENSEMBL cdna:known chromosome:CEL140:IV:13656382:13659516:-1 gene:Y45F10C.1 11/11 A 
B0513.6 ENSEMBL cdna:known chromosome:CEL140:IV:13854324:13857320:1 gene:B0513.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016114 1/11 Cross Hyb Matching Probes None
SNAP00000016072 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13854329-13857326(+) 99.12 99.12
chrIV:13656387-13659522(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y45F10C.1
B0513.6
Entrez Gene 182019 Entrez gene
189922 Entrez gene
SwissProt O45229 EMBL-EBI
O45943 EMBL-EBI
WormBase CE15562 Wormbase
CE16635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05118 Hypothetical protein B0513.6 [Caenorhabditis elegans] ref|NP_502667.1| B0513.6 [Caenorhabditis elegans] 0.0
blast CAB16477 Hypothetical protein Y45F10C.1 [Caenorhabditis elegans] ref|NP_502638.1| Y45F10C.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.9E-52
Pfam IPR006570 EMBL-EBI SPK 1.3E-59
Pfam IPR006570 EMBL-EBI SPK 2.7E-52
Pfam IPR006570 EMBL-EBI SPK 1.0E-44
Pfam IPR006570 EMBL-EBI SPK 9.7E-11
Pfam IPR006570 EMBL-EBI SPK 6.9E-11
Pfam IPR006570 EMBL-EBI SPK 4.6E-11
Pfam IPR006570 EMBL-EBI SPK 1.9E-11
Sequence
Target Sequence 
>C. ELEGANS:186268_S_AT
gcgactgttatcgatagagctccgaaggttaagatttctgatgacacaaaagggaatgtt
gacaagcacaaggctcaacaaattattgatttgctcaagacttttacaactgttgtcgaa
agtgcgccgaaattagagatcgttgatgagtccgaagtacagtgtgatgcagtcaacaat
aacaaggcacaagaagctgatgtggaaggatctgaatatccgaagatctcgatgctcaat
gtacttgacaagttggacaatatgctcatttctcttgaatcggaacttttaaatgagttg
ctaaatgagattgaacaacttcgcgttggaccggcggataagatgattccgttgaaacta
ttcatcaatgccatggagtcgatgttgcagaatatcactggaaagttccaaacgaaagat
gcagatgggagtacaccagcaaaagattttttgaaaactttgacgcattttctaaagtgg
atgaaggttccgttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACTGTTATCGATAGAGCTCCGA 590 289 1327 Antisense
GAGCTCCGAAGGTTAAGATTTCTGA 40 387 1343 Antisense
GGGAATGTTGACAAGCACAAGGCTC 363 493 1378 Antisense
TGATTTGCTCAAGACTTTTACAACT 179 561 1413 Antisense
TACAACTGTTGTCGAAAGTGCGCCG 292 641 1431 Antisense
GAGATCGTTGATGAGTCCGAAGTAC 578 395 1462 Antisense
GATGAGTCCGAAGTACAGTGTGATG 513 411 1471 Antisense
GATGCTCAATGTACTTGACAAGTTG 8 415 1557 Antisense
CTTGACAAGTTGGACAATATGCTCA 256 219 1570 Antisense
GAAAACTTTGACGCATTTTCTAAAG 237 353 1779 Antisense
CTAAAGTGGATGAAGGTTCCGTTGC 684 223 1798 Antisense
Sequence Source Affymetrix Proprietary Database