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[186266_at]

Description F02E11.2 /REP_DB=WormBase Gene ID /WP=CE09193 /TR=O16571 /GB=AAB66049.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      6grp_total > 12      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 617
1 2 3 4 range
A 369.4
(-1.6)
P 		273.1
(-2.6)
A 		234.9
(-3)
A 		808.2
(3)
P 		573
B 490.6
(3)
P 		281.5
(-1.2)
P 		191.6
(-3)
A 		418.8
(1.6)
P 		299
C 428.5
(2.1)
P 		218.5
(-2.8)
A 		209.3
(-3)
A 		464.7
(3)
P 		255
avr 429.5
(0.7) 		257.7
(-2.2) 		211.9
(-3) 		563.9
(3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 426.7
(3)
P 		376.8
(1.8)
P 		370.2
(1.6)
P 		290.1
(-0.4)
P 		367
(1.5)
P 		185.9
(-3)
A 		241
B 414.6
(2.3)
P 		442.9
(3)
P 		373.5
(1.4)
P 		236.6
(-1.9)
P 		351
(0.8)
P 		188.7
(-3)
P 		254
C 351.6
(-0.7)
P 		538.6
(3)
P 		339.2
(-1)
P 		352.8
(-0.7)
P 		251.5
(-2.8)
A 		239.2
(-3)
P 		299
avr 397.6
(1.7) 		452.8
(3) 		361
(0.8) 		293.2
(-0.9) 		323.2
(-0.1) 		204.6
(-3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 134.5
(3)
P 		59.3
(-3)
A 		61.4
(-2.8)
A 		118.3
(1.7)
P 		75
B 156.5
(3)
P 		69.5
(-1.7)
P 		44.4
(-3)
A 		89.2
(-0.6)
P 		112
C 141.8
(3)
P 		62.8
(-3)
A 		72.9
(-2.2)
A 		78.4
(-1.8)
P 		79
avr 144.3
(3) 		63.9
(-2.7) 		59.6
(-3) 		95.3
(-0.5) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 78.7
(-0.7)
P 		134
(3)
P 		80.6
(-0.6)
P 		73.6
(-1.1)
P 		110.7
(1.4)
P 		45.3
(-3)
A 		89
B 144.2
(2.8)
P 		147.4
(3)
P 		90.7
(-1)
P 		62.7
(-3)
P 		142.6
(2.7)
P 		70.4
(-2.5)
P 		85
C 130.3
(0.8)
P 		164.3
(3)
P 		86.3
(-2)
P 		71
(-3)
P 		81.4
(-2.3)
A 		80.1
(-2.4)
P 		93
avr 117.7
(0.8) 		148.6
(3) 		85.9
(-1.5) 		69.1
(-2.7) 		111.6
(0.3) 		65.3
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4687
Sequence Type Exemplar sequence
Representative Public ID F02E11.2 NCBI
Target Description F02E11.2 /REP_DB=WormBase Gene ID /WP=CE09193 /TR=O16571 /GB=AAB66049.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062091 NCBI Caenorhabditis elegans F02E11.2 (F02E11.2) mRNA, complete cds. 11/11 None
F02E11.2 ENSEMBL cdna:known chromosome:CEL140:II:3262825:3271414:1 gene:F02E11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013531 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3262823-3271413(+) 91.16 100.0
Public Domain and Genome References
Gene Title
Ensembl F02E11.2
Entrez Gene 184096 Entrez gene
SwissProt O16571 EMBL-EBI
WormBase CE36816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66049 Hypothetical protein F02E11.2 [Caenorhabditis elegans] ref|NP_494492.2| F02E11.2 [Caenorhabditis elegans] 0.0
blast CAE73885 Hypothetical protein CBG21482 [Caenorhabditis briggsae] 3.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494492.2 8 7-26,81-103,167-189,204-226,239-258,268-290,372-394,486-508
F02E11.2 8 7-26,81-103,167-189,204-226,239-258,268-290,372-394,486-508
Sequence
Target Sequence 
>C. ELEGANS:186266_AT
gtaaccacagggattccgatgttcaacgccatcatttaagaccccaattaagcaaacaga
gcactttgggcccagggcctcatgttttcaaaagttctgtatttaaaatacaaatcattt
ctaaggtcatttttcacccggaaatttcaaaaaaaaaacttcaaaaaaaagtttacatcc
cctacctatttataattcatagtatatgcttccgctcgacatttacctttttccggctca
ttttcccattttttgaatttattttcctcaagtttcacttcaaattgctacttttcagaa
tgagtggctccggtgaaaaaatgataatgactcgaaataatccattaatcccaaaagctc
aagagcttctgccacctcctccccttctgaaaaatacattccccctcccatctcttctta
ttagaaaagaaagagaaatcacgcttggcaccgaccaagacccgtacaacaaggaggagc
tggtgaacacgttgaaaggtcgcgaactgggattctttgtcattttctacatttttgctg
ttatgtgcattgtgatggcgttcgagttctttaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCACAGGGATTCCGATGTTCA 122 461 842 Antisense
TCAACGCCATCATTTAAGACCCCAA 311 631 864 Antisense
AGCAAACAGAGCACTTTGGGCCCAG 267 75 892 Antisense
CCCAGGGCCTCATGTTTTCAAAAGT 196 259 912 Antisense
TACATCCCCTACCTATTTATAATTC 666 643 1015 Antisense
TCATAGTATATGCTTCCGCTCGACA 686 619 1038 Antisense
TTTATTTTCCTCAAGTTTCACTTCA 237 675 1099 Antisense
CCTCCTCCCCTTCTGAAAAATACAT 382 267 1216 Antisense
AAATCACGCTTGGCACCGACCAAGA 379 117 1277 Antisense
GGTCGCGAACTGGGATTCTTTGTCA 88 503 1339 Antisense
GATGGCGTTCGAGTTCTTTAAACCA 130 407 1395 Antisense
Sequence Source Affymetrix Proprietary Database