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[186265_at]

Description Y48E1B.11 /REP_DB=WormBase Gene ID /WP=CE14872 /TR=O18201 /GB=CAB07695.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 08      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 68.5
(-1)
P 		47.3
(-1.9)
P 		20
(-3)
A 		163.9
(3)
P 		144
B 75.6
(2.8)
P 		43.1
(-3)
A 		63.3
(0.6)
P 		76.9
(3)
P 		34
C 65.9
(-1.3)
P 		66.8
(-1.2)
P 		49.1
(-3)
P 		107
(3)
P 		58
avr 70
(-0.8) 		52.4
(-2.3) 		44.1
(-3) 		115.9
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 103.2
(3)
P 		51.9
(-2.7)
A 		73
(-0.4)
P 		93.1
(1.9)
P 		62.1
(-1.6)
A 		49.6
(-3)
A 		54
B 77.4
(2.2)
P 		64.1
(0.7)
P 		84.9
(3)
P 		66.5
(1)
P 		54
(-0.4)
A 		30.8
(-3)
A 		54
C 68.8
(1.7)
P 		76.4
(2.4)
P 		50.1
(-0.1)
A 		18.6
(-3)
A 		55.3
(0.4)
A 		82.8
(3)
P 		64
avr 83.1
(3) 		64.1
(-1) 		69.3
(0.1) 		59.4
(-2) 		57.1
(-2.4) 		54.4
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24.9
(3)
P 		10.3
(-1.4)
P 		5.2
(-3)
A 		24
(2.7)
P 		20
B 24.1
(3)
P 		10.6
(-3)
A 		14.7
(-1.2)
P 		16.4
(-0.4)
P 		14
C 21.8
(3)
P 		19.2
(-0.3)
P 		17.1
(-3)
P 		18
(-1.9)
P 		5
avr 23.6
(3) 		13.4
(-2.4) 		12.3
(-3) 		19.5
(0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 19
(0.6)
P 		18.5
(0.3)
A 		15.9
(-1)
P 		23.6
(3)
P 		18.7
(0.4)
A 		12.1
(-3)
A 		12
B 26.9
(3)
P 		21.3
(0.8)
P 		20.6
(0.5)
P 		17.6
(-0.6)
P 		22
(1.1)
A 		11.5
(-3)
A 		15
C 25.5
(2.4)
P 		23.3
(1.9)
P 		12.8
(-0.7)
A 		3.8
(-3)
A 		17.9
(0.5)
A 		27.7
(3)
P 		24
avr 23.8
(3) 		21
(1.1) 		16.4
(-2) 		15
(-3) 		19.5
(0.1) 		17.1
(-1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3770
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.11 NCBI
Target Description Y48E1B.11 /REP_DB=WormBase Gene ID /WP=CE14872 /TR=O18201 /GB=CAB07695.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064454 NCBI Caenorhabditis elegans Y48E1B.11 (Y48E1B.11) mRNA, complete cds. 11/11 None
Y48E1B.11 ENSEMBL cdna:known chromosome:CEL140:II:13595707:13596439:-1 gene:Y48E1B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010070 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13595703-13596436(-) 61.43 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1B.11
Entrez Gene 190029 Entrez gene
SwissProt O18201 EMBL-EBI
WormBase CE14872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07695 Hypothetical protein Y48E1B.11 [Caenorhabditis elegans] ref|NP_496855.1| Y48E1B.11 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:186265_AT
gaaagcgtcccatgcatattcaaatatttatcatttgacaagaaaagccatcttgcaaat
ttcaactcgatatttcgcaagcttgaaaaaaagcttccctatcactttaattgtataaaa
atcgatacaacaagggaggactggcacttttcgattgataaaaaatataatttcaatatt
caaactgctcagcttggcgccaacgttttattcggtggagttcaacaattcggaatttta
attgcaagtcctgaagattcacagactgaaacctttcggaaattggtggatttctattta
aatcgaccaggaacaagtattcatacactgcaaattctgttttcacagatttctggcttc
cctcataaattgaaatggaagagtttaggccgaactagtccattttggctcggccatatc
tggggtagatttaaggtgcgttgcgtgtcgcgtcgcggctcggttttagttgtaaaacga
aatgtacgtgtccgtgtggagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCGTCCCATGCATATTCAAAT 628 359 22 Antisense
GCCATCTTGCAAATTTCAACTCGAT 492 279 68 Antisense
AGCTTCCCTATCACTTTAATTGTAT 96 79 113 Antisense
AAGGGAGGACTGGCACTTTTCGATT 542 157 153 Antisense
TATTCAAACTGCTCAGCTTGGCGCC 526 663 198 Antisense
CTTGGCGCCAACGTTTTATTCGGTG 226 213 214 Antisense
CATACACTGCAAATTCTGTTTTCAC 13 215 343 Antisense
ATTTCTGGCTTCCCTCATAAATTGA 352 17 370 Antisense
GGCCGAACTAGTCCATTTTGGCTCG 706 537 409 Antisense
TTGGCTCGGCCATATCTGGGGTAGA 104 699 426 Antisense
GAAATGTACGTGTCCGTGTGGAGTA 474 361 500 Antisense
Sequence Source Affymetrix Proprietary Database