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[186264_at]

Description Y73C8C.4 /REP_DB=WormBase Gene ID /WP=CE20360 /TR=Q9TXW1 /GB=AAC69342.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 35.8
(-0.6)
A 		16.5
(-3)
A 		65.5
(3)
A 		41.5
(0.1)
A 		49
B 24.2
(-1.3)
A 		37.5
(0.6)
A 		12.6
(-3)
A 		54.3
(3)
A 		42
C 11.6
(-3)
A 		44.5
(-1)
A 		16.9
(-2.7)
A 		111.7
(3)
A 		100
avr 23.9
(-3) 		32.8
(-1.8) 		31.7
(-2) 		69.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 14.7
(-2.1)
A 		10.4
(-2.6)
A 		6.5
(-3)
A 		23.8
(-1.1)
A 		60.3
(3)
A 		13
(-2.3)
A 		54
B 13.1
(-2.3)
A 		12.7
(-2.4)
A 		11.9
(-2.5)
A 		56.9
(3)
A 		7.9
(-2.9)
A 		7.4
(-3)
A 		50
C 8.6
(-2.4)
A 		18
(3)
A 		12.5
(-0.1)
A 		15.8
(1.7)
A 		12.7
(-0)
A 		7.5
(-3)
A 		11
avr 12.1
(-2.3) 		13.7
(-1.8) 		10.3
(-2.7) 		32.2
(3) 		27
(1.6) 		9.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13
(1.2)
A 		3.6
(-3)
A 		17.1
(3)
A 		6.1
(-1.9)
A 		14
B 7.7
(0.3)
A 		9.3
(1.4)
A 		2.9
(-3)
A 		11.6
(3)
A 		9
C 3.8
(-3)
A 		12.8
(0.6)
A 		5.9
(-2.2)
A 		18.8
(3)
A 		15
avr 8.2
(-3) 		8.6
(-2.4) 		8.6
(-2.4) 		12.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.7
(-2.5)
A 		3.7
(-2.2)
A 		1.4
(-3)
A 		6
(-1.4)
A 		18.2
(3)
A 		3.2
(-2.4)
A 		17
B 4.5
(-2.1)
A 		4.2
(-2.3)
A 		2.9
(-2.9)
A 		15.1
(3)
A 		3.2
(-2.8)
A 		2.7
(-3)
A 		12
C 3.2
(-1.6)
A 		5.5
(3)
A 		3.2
(-1.6)
A 		3.2
(-1.6)
A 		4.1
(0.2)
A 		2.5
(-3)
A 		3
avr 3.5
(-2) 		4.5
(-1) 		2.5
(-3) 		8.1
(2.6) 		8.5
(3) 		2.8
(-2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15483
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.4 NCBI
Target Description Y73C8C.4 /REP_DB=WormBase Gene ID /WP=CE20360 /TR=Q9TXW1 /GB=AAC69342.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071447
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003111 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3099839:3105737:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071447 3/11 Cross Hyb Matching Probes None
SNAP00000003100 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041431 1/11 Cross Hyb Matching Probes None
Y73C8C.4 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3099838-3101976(-) 83.56 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33792 hypothetical protein Y73C8C.5 - Caenorhabditis elegans 0.0
blast AAK68599 Seven tm receptor protein 66 [Caenorhabditis elegans] ref|NP_503849.1| Seven TM Receptor family member (str-66) [Caenorhabditis elegans] 1.0E-153
blast AAC69342 Hypothetical protein Y73C8C.4 [Caenorhabditis elegans] ref|NP_503848.2| Y73C8C.4 [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 5.6E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003111 12 13-35,47-64,90-112,133-155,197-219,246-268,283-305,318-337,365-387,408-430,472-494,518-540
Sequence
Target Sequence 
>C. ELEGANS:186264_AT
agaagaaacgctggtccaagccgacgtcagtctgtgatgagttgaagggcttcccgctga
gtgaagtgcaaaatgcgagccacgagccggcttcacgcctacgtcgcgcgccgctgtgtg
tgtgcagcgaagtgcgaaaggtggttatttggaagcggccgacacgttcgcggttcctcg
ccgcactatacatgtggcgtggtagatgcggtgaaaccggcgcggcgaccgctgaggcag
gcgaaggcgccgacctcatgggagcccagttaaagtttggcaacatgcattttcaatttt
tcgctgatttttgcacctgcatgaaaagctcttacttttctgaagaccgcaccaacgaaa
ccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGAAACGCTGGTCCAAGCCGAC 241 75 725 Antisense
TCCAAGCCGACGTCAGTCTGTGATG 153 583 739 Antisense
GGCTTCCCGCTGAGTGAAGTGCAAA 111 537 772 Antisense
CAAAATGCGAGCCACGAGCCGGCTT 79 191 793 Antisense
CGCGCCGCTGTGTGTGTGCAGCGAA 222 257 831 Antisense
TCCTCGCCGCACTATACATGTGGCG 605 593 899 Antisense
TGTGGCGTGGTAGATGCGGTGAAAC 97 555 917 Antisense
CCGACCTCATGGGAGCCCAGTTAAA 95 263 974 Antisense
TCGCTGATTTTTGCACCTGCATGAA 540 599 1025 Antisense
GCACCTGCATGAAAAGCTCTTACTT 230 315 1037 Antisense
TCTGAAGACCGCACCAACGAAACCG 259 607 1063 Antisense
Sequence Source Affymetrix Proprietary Database