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[186263_at]

Description F43C11.7 /REP_DB=WormBase Gene ID /WP=CE23722 /TR=Q9U5C1 /GB=AAF16617.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 98      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 95      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1141
1 2 3 4 range
A 459.2
(-2.1)
P 		318.4
(-3)
P 		397
(-2.5)
P 		1212.4
(3)
P 		894
B 452.9
(-2.3)
P 		344.6
(-2.9)
P 		325.2
(-3)
M 		1416.1
(3)
P 		1091
C 653
(-0.6)
P 		433.6
(-2)
P 		275.1
(-3)
P 		1236.8
(3)
P 		962
avr 521.7
(-1.8) 		365.5
(-2.8) 		332.4
(-3) 		1288.4
(3) 		956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 443
(-3)
P 		495.6
(-1.3)
P 		457.9
(-2.5)
P 		627
(3)
P 		534.9
(-0)
P 		614.1
(2.6)
P 		184
B 509.5
(-0)
P 		401.7
(-3)
P 		401
(-3)
P 		518.9
(0.2)
P 		517.2
(0.2)
P 		620.7
(3)
P 		220
C 557.5
(0.5)
P 		322.1
(-3)
P 		475.8
(-0.7)
P 		550.6
(0.4)
P 		726.6
(3)
P 		698.6
(2.6)
P 		405
avr 503.3
(-0.6) 		406.5
(-3) 		444.9
(-2) 		565.5
(1) 		592.9
(1.7) 		644.5
(3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 167.2
(2.4)
P 		69.1
(-3)
P 		103.8
(-1.1)
P 		177.5
(3)
P 		108
B 144.4
(-1.2)
P 		85.1
(-2.7)
P 		75.4
(-3)
M 		301.8
(3)
P 		226
C 216.2
(3)
P 		124.7
(-1.6)
P 		95.9
(-3)
P 		208.5
(2.6)
P 		120
avr 175.9
(0.7) 		93
(-2.9) 		91.7
(-3) 		229.3
(3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 81.7
(-3)
P 		176.2
(3)
P 		99.7
(-1.9)
P 		159
(1.9)
P 		161.4
(2.1)
P 		149.5
(1.3)
P 		95
B 177.3
(0.6)
P 		133.7
(-1.4)
P 		97.4
(-3)
P 		137.4
(-1.2)
P 		210.1
(2)
P 		231.5
(3)
P 		134
C 206.7
(1.8)
P 		98.3
(-3)
P 		121.1
(-2)
P 		110.7
(-2.5)
P 		235.1
(3)
P 		233.9
(2.9)
P 		137
avr 155.2
(-0) 		136.1
(-1.2) 		106.1
(-3) 		135.7
(-1.2) 		202.2
(2.8) 		205
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4398
Sequence Type Exemplar sequence
Representative Public ID F43C11.7 NCBI
Target Description F43C11.7 /REP_DB=WormBase Gene ID /WP=CE23722 /TR=Q9U5C1 /GB=AAF16617.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061844 NCBI Caenorhabditis elegans F43C11.7 (F43C11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000013015 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2332521:2337653:1 11/11 None
F43C11.7 ENSEMBL cdna:known chromosome:CEL140:II:2335934:2337689:1 gene:F43C11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012993 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2335936-2337652(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.7
Entrez Gene 173591 Entrez gene
SwissProt Q9U5C1 EMBL-EBI
WormBase CE23722 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF16617 Hypothetical protein F43C11.7 [Caenorhabditis elegans] ref|NP_494245.1| F43C11.7 [Caenorhabditis elegans] 1.0E-170
blast AAF16618 Hypothetical protein F43C11.8 [Caenorhabditis elegans] ref|NP_494244.1| F43C11.8 [Caenorhabditis elegans] 1.0E-162
blast AAF16617 Hypothetical protein F43C11.7 [Caenorhabditis elegans] ref|NP_494245.1| F43C11.7 [Caenorhabditis elegans] 1.0E-154
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 1.0E-136
blast AAB66144 Hypothetical protein ZK1240.8 [Caenorhabditis elegans] ref|NP_494242.1| ZK1240.8 [Caenorhabditis elegans] 2.0E-50
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 9.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.9E-9
Pfam IPR001841 EMBL-EBI Zn-finger, RING 9.0E-6
Sequence
Target Sequence 
>C. ELEGANS:186263_AT
ggagcaccaccaaattgcgaggagcacacttataatctggccgagttcgtttgtatcagt
ccaaactgctccagtcgaagcaagctgatgtgccggacttgtgaggagttcggagtccac
gcaggacatagaaaagggcttctgcaggttgaagctaagaaagttaggcagaaccttcta
gagcggcaaaggaagcttcaagtcaacaagaaacaggttgatgataaaattcaagcactg
gaaaaggctgctctcaagaagaatgatgagctatataaggagaaatacgatgagataaca
cgacactacgacagaatccgaagctctgttgcagaacgagaaaagacttcaaaggaagtg
ttaaagaagagtgtgctgaccagtgaggaggacaatcggatgggtcaaatctccaatcat
gtcatcaggcatctactggagaagaagtgtgaggaagtggaacagctcgtcgggatgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCACCACCAAATTGCGAGGAGC 499 519 277 Antisense
GGAGCACACTTATAATCTGGCCGAG 689 519 297 Antisense
TGGCCGAGTTCGTTTGTATCAGTCC 325 545 314 Antisense
TGTATCAGTCCAAACTGCTCCAGTC 90 561 328 Antisense
GCTGATGTGCCGGACTTGTGAGGAG 584 295 360 Antisense
GGAGTTCGGAGTCCACGCAGGACAT 610 515 381 Antisense
TAGGCAGAACCTTCTAGAGCGGCAA 639 651 441 Antisense
AACACGACACTACGACAGAATCCGA 183 137 573 Antisense
AGAATCCGAAGCTCTGTTGCAGAAC 706 73 589 Antisense
GGGTCAAATCTCCAATCATGTCATC 581 497 678 Antisense
AGTGGAACAGCTCGTCGGGATGACC 127 59 732 Antisense
Sequence Source Affymetrix Proprietary Database