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[186262_s_at]

Description Y71F9B.9 /REP_DB=WormBase Gene ID /WP=CE25572 /TR=Q9N4G5 /GB=AAF36021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 84      4grp_total > 09      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 154.3
(-3)
P 		163.4
(-2.8)
P 		177.1
(-2.5)
P 		414.3
(3)
P 		260
B 101.7
(-3)
P 		172.1
(-1.5)
P 		155.7
(-1.8)
P 		379.4
(3)
P 		278
C 119.1
(-3)
P 		171.6
(-2.1)
P 		179.6
(-1.9)
P 		460.7
(3)
P 		342
avr 125
(-3) 		169
(-2.1) 		170.8
(-2.1) 		418.1
(3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 156.6
(-3)
P 		165.9
(-2.6)
P 		185
(-1.9)
P 		312.1
(3)
P 		276.7
(1.6)
P 		171.3
(-2.4)
P 		156
B 162.1
(-2.9)
P 		159.3
(-3)
P 		209.7
(-1.4)
P 		284
(1.1)
P 		343.3
(3)
P 		262.5
(0.4)
P 		184
C 149.2
(-3)
P 		196.5
(-1.3)
P 		155.1
(-2.8)
P 		305.8
(2.8)
P 		311.7
(3)
P 		247.6
(0.6)
P 		163
avr 156
(-3) 		173.9
(-2.3) 		183.3
(-1.9) 		300.6
(2.6) 		310.6
(3) 		227.1
(-0.2) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 56.2
(1.9)
P 		35.5
(-3)
P 		46.3
(-0.4)
P 		60.6
(3)
P 		25
B 32.4
(-3)
P 		42.5
(-1.7)
P 		36.1
(-2.5)
P 		80.8
(3)
P 		48
C 39.4
(-3)
P 		49.3
(-1.4)
P 		62.6
(0.6)
P 		77.7
(3)
P 		38
avr 42.7
(-2.9) 		42.4
(-3) 		48.3
(-1.8) 		73
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 28.9
(-3)
P 		59
(0.3)
P 		40.3
(-1.7)
P 		79.1
(2.5)
P 		83.5
(3)
P 		41.7
(-1.6)
P 		55
B 56.4
(-2.6)
P 		53
(-2.9)
P 		50.9
(-3)
P 		75.2
(-1.4)
P 		139.5
(3)
P 		97.9
(0.2)
P 		89
C 55.3
(-1.5)
P 		60
(-1)
P 		39.5
(-3)
P 		61.5
(-0.9)
P 		100.9
(3)
P 		82.9
(1.2)
P 		61
avr 46.9
(-2.7) 		57.3
(-1.7) 		43.6
(-3) 		71.9
(-0.4) 		108
(3) 		74.2
(-0.1) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186262_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.68
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.9 NCBI
Target Description Y71F9B.9 /REP_DB=WormBase Gene ID /WP=CE25572 /TR=Q9N4G5 /GB=AAF36021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058636 NCBI Caenorhabditis elegans Y71F9B.9 (Y71F9B.9) mRNA, complete cds. 11/11 A 
SNAP00000013310 ENSEMBL cdna:SNAP chromosome:CEL140:I:2759075:2760983:-1 11/11 None
GENEFINDER00000013348 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2759075:2773645:-1 11/11 None
Y71F9B.9 ENSEMBL cdna:known chromosome:CEL140:I:2759031:2760983:-1 gene:Y71F9B.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2759074-2760983(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.9
Entrez Gene 171839 Entrez gene
SwissProt Q9N4G5 EMBL-EBI
WormBase CE28811 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623555_AT dm
DROSGENOME1:152931_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6631 fatty acid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36027 Suppressor of pal-1 protein 3, isoform a [Caenorhabditis elegans] ref|NP_740821.1| Suppressor of Pal-1 family member (sop-3) [Caenorhabditis elegans] gb|AAG45416.1| SOP-3 [Caenorhabditis elegans] 0.0
blast AAL27266 Suppressor of pal-1 protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021811.1| Suppressor of Pal-1 family member (sop-3) [Caenorhabditis elegans] 0.0
blast AAF36021 Hypothetical protein Y71F9B.9 [Caenorhabditis elegans] ref|NP_491037.1| Y71F9B.9 [Caenorhabditis elegans] 1.0E-175
blast AAF36021 Hypothetical protein Y71F9B.9 [Caenorhabditis elegans] ref|NP_491037.1| Y71F9B.9 [Caenorhabditis elegans] 1.0E-168
blast CAE60502 Hypothetical protein CBG04121 [Caenorhabditis briggsae] 1.0E-138
blast AAV36867 RE67096p [Drosophila melanogaster] gb|AAF58227.1| CG10131-PA [Drosophila melanogaster] ref|NP_610974.1| CG10131-PA [Drosophila melanogaster] 8.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 5.3E-22
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2.0E-44
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 5.3E-22
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:186262_S_AT
ggcgtgaatgatgtggatgcggtgatgtcagctggtctagggccgagatatgcgttcaat
gggacttgtgaaacggttcatttgaacgcgtttggtgtcagagattattttaaaagatat
gcggctggaattacggcggtaaggagcttgaagcttgtcctgaaggatatggggccgatt
ccagatttcacagacgagaaagtcattaataagcttgaagaagagctggagccgaaaatg
agcactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTGAATGATGTGGATGCGGTGA 635 541 652 Antisense
GTGGATGCGGTGATGTCAGCTGGTC 58 489 664 Antisense
TCAGCTGGTCTAGGGCCGAGATATG 391 625 679 Antisense
GGCCGAGATATGCGTTCAATGGGAC 135 541 692 Antisense
CAATGGGACTTGTGAAACGGTTCAT 244 161 708 Antisense
GGTTCATTTGAACGCGTTTGGTGTC 54 507 726 Antisense
GAACGCGTTTGGTGTCAGAGATTAT 329 347 735 Antisense
GATATGCGGCTGGAATTACGGCGGT 707 425 767 Antisense
GAAGGATATGGGGCCGATTCCAGAT 515 333 813 Antisense
GCCGATTCCAGATTTCACAGACGAG 217 285 825 Antisense
CTGGAGCCGAAAATGAGCACTTTGA 706 239 877 Antisense
Sequence Source Affymetrix Proprietary Database