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[186261_at]

Description Y71F9B.9 /REP_DB=WormBase Gene ID /WP=CE25572 /TR=Q9N4G5 /GB=AAF36021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 90      6grp_total > 93      4grp_total > 17      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 90.9
(-2.3)
P 		182.9
(2.8)
A 		79
(-3)
A 		185.8
(3)
P 		107
B 71.9
(-3)
A 		75.9
(-2.8)
A 		103.7
(-1.3)
P 		187.2
(3)
P 		115
C 74.5
(-2.7)
M 		70.2
(-3)
A 		124.9
(0.2)
P 		172.2
(3)
P 		102
avr 79.1
(-3) 		109.7
(-1.2) 		102.5
(-1.6) 		181.7
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 88.9
(-3)
P 		111.9
(-2.2)
P 		143.8
(-1)
P 		232.1
(2.3)
P 		252.4
(3)
P 		134.7
(-1.3)
P 		164
B 118.6
(-3)
P 		131.4
(-2.6)
P 		192.5
(-0.9)
P 		199.3
(-0.7)
P 		325.1
(3)
P 		165.3
(-1.6)
P 		207
C 120.3
(-1.6)
P 		184.8
(0.5)
P 		77.5
(-3)
P 		200.1
(1)
P 		263.6
(3)
P 		137.9
(-1.1)
P 		186
avr 109.3
(-3) 		142.7
(-1.8) 		137.9
(-2) 		210.5
(0.5) 		280.4
(3) 		146
(-1.7) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 33.1
(0.9)
P 		39.7
(3)
A 		20.7
(-3)
A 		27.2
(-0.9)
P 		19
B 22.9
(-1.8)
A 		18.7
(-3)
A 		24
(-1.5)
P 		39.9
(3)
P 		21
C 24.7
(-1.8)
M 		20.2
(-3)
A 		43.5
(3)
P 		29
(-0.7)
P 		23
avr 26.9
(-2.3) 		26.2
(-3) 		29.4
(0.3) 		32
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 16.4
(-3)
P 		39.8
(-0.7)
P 		31.3
(-1.5)
P 		58.9
(1.3)
P 		76.2
(3)
P 		32.8
(-1.4)
P 		60
B 41.3
(-3)
P 		43.7
(-2.8)
P 		46.8
(-2.6)
P 		52.8
(-2.2)
P 		132.1
(3)
P 		61.6
(-1.7)
P 		91
C 44.6
(-0.7)
P 		56.4
(0.4)
P 		19.7
(-3)
P 		40.2
(-1.1)
P 		85.3
(3)
P 		46.2
(-0.6)
P 		66
avr 34.1
(-2.9) 		46.6
(-1.7) 		32.6
(-3) 		50.6
(-1.3) 		97.9
(3) 		46.9
(-1.7) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.68
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.9 NCBI
Target Description Y71F9B.9 /REP_DB=WormBase Gene ID /WP=CE25572 /TR=Q9N4G5 /GB=AAF36021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058636(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058636 NCBI Caenorhabditis elegans Y71F9B.9 (Y71F9B.9) mRNA, complete cds. 10/11 A 
SNAP00000013310 ENSEMBL cdna:SNAP chromosome:CEL140:I:2759075:2760983:-1 10/11 None
GENEFINDER00000013348 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2759075:2773645:-1 10/11 None
Y71F9B.9 ENSEMBL cdna:known chromosome:CEL140:I:2759031:2760983:-1 gene:Y71F9B.9 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2759074-2760983(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.9
Entrez Gene 171839 Entrez gene
SwissProt Q9N4G5 EMBL-EBI
WormBase CE28811 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623555_AT dm
DROSGENOME1:152931_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6631 fatty acid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36027 Suppressor of pal-1 protein 3, isoform a [Caenorhabditis elegans] ref|NP_740821.1| Suppressor of Pal-1 family member (sop-3) [Caenorhabditis elegans] gb|AAG45416.1| SOP-3 [Caenorhabditis elegans] 0.0
blast AAL27266 Suppressor of pal-1 protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021811.1| Suppressor of Pal-1 family member (sop-3) [Caenorhabditis elegans] 0.0
blast AAF36021 Hypothetical protein Y71F9B.9 [Caenorhabditis elegans] ref|NP_491037.1| Y71F9B.9 [Caenorhabditis elegans] 1.0E-175
blast AAF36021 Hypothetical protein Y71F9B.9 [Caenorhabditis elegans] ref|NP_491037.1| Y71F9B.9 [Caenorhabditis elegans] 1.0E-168
blast CAE60502 Hypothetical protein CBG04121 [Caenorhabditis briggsae] 1.0E-138
blast AAV36867 RE67096p [Drosophila melanogaster] gb|AAF58227.1| CG10131-PA [Drosophila melanogaster] ref|NP_610974.1| CG10131-PA [Drosophila melanogaster] 8.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 5.3E-22
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2.0E-44
Pfam IPR006108 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, C-terminal 5.3E-22
Pfam IPR006176 EMBL-EBI 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:186261_AT
cgatccttgcaagtagtacgtcaacaattccagcgtccaagttcactgatggtctgataa
ataaggaacgttgtcttatcgtccaccccgtcaatcctccgctcttccttcctcttaccg
agcttgttcctgctccgtggacctcacaggatactgtagatagagctgcagagatcatgc
gatctgtgaagcaggagccggtgaagctgaagaaagaagttttgggattcgttgtgaatc
gtctacaattcgctttgctagcagaaacctggcgtttggtagccgatggcgtcattggcg
tgaatgatgtggatgcggtgatgtcagctggtctagggccgagatatgcgttcaatggga
cttgtgaaacggttcatttgaacgcgtttggtgtcagagattattttaaaagatatgcgg
ctggaattacggcggtaaggagcttgaagcttgtcctgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCCTTGCAAGTAGTACGTCAAC 446 249 356 Antisense
GTACGTCAACAATTCCAGCGTCCAA 204 459 371 Antisense
CAGCGTCCAAGTTCACTGATGGTCT 269 203 386 Antisense
TAAGGAACGTTGTCTTATCGTCCAC 79 631 417 Antisense
CTCCGTGGACCTCACAGGATACTGT 517 233 488 Antisense
GCGATCTGTGAAGCAGGAGCCGGTG 16 291 534 Antisense
ATCGTCTACAATTCGCTTTGCTAGC 670 35 593 Antisense
CGCTTTGCTAGCAGAAACCTGGCGT 636 253 606 Antisense
AACCTGGCGTTTGGTAGCCGATGGC 145 135 621 Antisense
GTAGCCGATGGCGTCATTGGCGTGA 136 457 634 Antisense
GGAGCTTGAAGCTTGTCCTGAAGGA 677 519 794 Antisense
Sequence Source Affymetrix Proprietary Database