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[186260_at]

Description Y40C5A.1 /REP_DB=WormBase Gene ID /WP=CE24255 /TR=Q9N3Z0 /GB=AAF60536.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 31      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 51      6grp_total > 31      4grp_total > 60      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 706.1
(1.1)
P 		865.5
(3)
P 		830.9
(2.6)
P 		364.3
(-3)
P 		501
B 620.6
(1.8)
P 		699.4
(3)
P 		607.8
(1.6)
P 		296.6
(-3)
P 		403
C 657.4
(1.9)
P 		764.5
(3)
P 		706.9
(2.4)
P 		199.5
(-3)
P 		565
avr 661.4
(1.6) 		776.5
(3) 		715.2
(2.2) 		286.8
(-3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 628.3
(0.9)
P 		769.8
(2.7)
P 		788.9
(3)
P 		628.9
(0.9)
P 		330.7
(-3)
P 		354.7
(-2.7)
P 		458
B 590.3
(0.3)
P 		736.1
(2.5)
P 		771
(3)
P 		449.3
(-1.7)
P 		362.4
(-3)
P 		429.3
(-2)
P 		409
C 528.7
(-1)
P 		771.9
(2.6)
P 		797.4
(3)
P 		554.3
(-0.6)
P 		397.9
(-3)
P 		397.5
(-3)
P 		400
avr 582.4
(0.1) 		759.3
(2.6) 		785.8
(3) 		544.2
(-0.4) 		363.7
(-3) 		393.8
(-2.6) 		422
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 257.1
(3)
P 		187.9
(1)
P 		217.2
(1.8)
P 		53.3
(-3)
P 		204
B 197.9
(3)
P 		172.7
(1.9)
P 		140.8
(0.5)
P 		63.2
(-3)
P 		135
C 217.6
(2.2)
P 		219.8
(2.3)
P 		246.4
(3)
P 		33.6
(-3)
P 		213
avr 224.2
(3) 		193.5
(1.9) 		201.5
(2.2) 		50
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 115.8
(-2.1)
P 		273.8
(3)
P 		171.8
(-0.3)
P 		159.5
(-0.7)
P 		99.8
(-2.6)
P 		86.4
(-3)
P 		187
B 205.4
(1.1)
P 		245
(3)
P 		187.2
(0.2)
P 		119
(-3)
P 		147.2
(-1.7)
P 		160.1
(-1)
P 		126
C 196
(1.1)
P 		235.5
(3)
P 		202.9
(1.4)
P 		111.5
(-3)
P 		128.7
(-2.2)
P 		133.1
(-2)
P 		124
avr 172.4
(-0.8) 		251.4
(3) 		187.3
(-0) 		130
(-2.8) 		125.2
(-3) 		126.5
(-2.9) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9533
Sequence Type Exemplar sequence
Representative Public ID Y40C5A.1 NCBI
Target Description Y40C5A.1 /REP_DB=WormBase Gene ID /WP=CE24255 /TR=Q9N3Z0 /GB=AAF60536.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068770(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068770 NCBI Caenorhabditis elegans Y40C5A.1 (Y40C5A.1) mRNA, complete cds. 10/11 None
SNAP00000028100 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7327870:7328944:-1 10/11 None
GENEFINDER00000028107 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7327870:7328944:-1 10/11 None
Y40C5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:7327720:7328959:-1 gene:Y40C5A.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7327875-7328950(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40C5A.1
Entrez Gene 189791 Entrez gene
SwissProt Q9N3Z0 EMBL-EBI
WormBase CE35366 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60536 Hypothetical protein Y40C5A.1 [Caenorhabditis elegans] ref|NP_501171.2| Y40C5A.1 [Caenorhabditis elegans] 1.0E-130
blast CAE61858 Hypothetical protein CBG05836 [Caenorhabditis briggsae] 6.0E-69
blast CAE62166 Hypothetical protein CBG06213 [Caenorhabditis briggsae] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 3.9E-7
Sequence
Target Sequence 
>C. ELEGANS:186260_AT
gaagctgcacacgaattgtatccatcaaatggtgtttatcgtctattttcggtgcaagtt
atggaatgtgttcaaaatcctgatcatattcttccacatctacatataagactggaagtt
tttttaaaaaaaggaacaatgatctttcaaagtattttttattttcaaattttgagaaat
ttcaagttgttttgcaaagattaccgtcccagaagcataagccgtaattatcacgaagtt
aacgttccaataattcgaactccatctcaacattcaatccatcaatctgttcgattcaac
gataacaaacgtcatcaccatcatcatcatcatgattcaataagaaacttcgtccatcat
gacactccatgccgaaactgtttccgtataattgttggaagccgttatcactgtcttcaa
tgtccagactatgatatttgtggagactgtgaaaaagatttggttcactacgagcatgct
cttctacgaattgtgactccaagggttacaagtattcctgattatgtcacagttaacgcc
cca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGCACACGAATTGTATCCAT 545 343 181 Antisense
GTGTTTATCGTCTATTTTCGGTGCA 165 485 212 Antisense
TGATCATATTCTTCCACATCTACAT 216 565 261 Antisense
TACCGTCCCAGAAGCATAAGCCGTA 328 647 382 Antisense
AATAATTCGAACTCCATCTCAACAT 678 171 429 Antisense
GAAACTTCGTCCATCATGACACTCC 514 355 524 Antisense
TGACACTCCATGCCGAAACTGTTTC 454 571 540 Antisense
CCGTTATCACTGTCTTCAATGTCCA 121 265 582 Antisense
GATTTGGTTCACTACGAGCATGCTC 244 427 637 Antisense
GAGCATGCTCTTCTACGAATTGTGA 361 389 652 Antisense
TGATTATGTCACAGTTAACGCCCCA 34 565 699 Antisense
Sequence Source Affymetrix Proprietary Database