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[186258_s_at]

Description C16E9.2A /REP_DB=WormBase Gene ID /WP=CE08233 /TR=Q18046 /GB=AAC47961.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 45      6grp_total > 90      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 103.9
(1.2)
A
48.4
(-2.1)
A
134.5
(3)
A
32.5
(-3)
A
102
B 149.5
(3)
P
24
(-2.8)
A
20.2
(-3)
A
32.1
(-2.4)
A
129
C 163.8
(3)
P
97.9
(0)
A
109.7
(0.6)
A
30.1
(-3)
A
134
avr 139.1
(3)
56.8
(-1.6)
88.1
(0.2)
31.6
(-3)
108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 79.7
(-2.6)
A
111.4
(0.5)
P
100.8
(-0.5)
P
122.3
(1.5)
P
75
(-3)
P
137.7
(3)
P
63
B 129.9
(3)
P
108.9
(1.8)
P
22.5
(-3)
A
103.1
(1.5)
P
94.4
(1)
P
86.7
(0.6)
P
107
C 119.5
(0)
P
146.9
(1.2)
P
51.3
(-3)
A
187.1
(3)
P
86.4
(-1.4)
P
112.6
(-0.3)
P
136
avr 109.7
(0.9)
122.4
(1.9)
58.2
(-3)
137.5
(3)
85.3
(-0.9)
112.3
(1.1)
79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 37.8
(3)
A
10.5
(-2)
A
35.2
(2.5)
A
4.8
(-3)
A
33
B 47.7
(3)
P
5.9
(-2.8)
A
4.7
(-3)
A
6.9
(-2.7)
A
43
C 54.2
(3)
P
28.1
(-0.2)
A
38.2
(1)
A
5.1
(-3)
A
49
avr 46.6
(3)
14.8
(-1.7)
26
(-0)
5.6
(-3)
41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.7
(-3)
A
39.6
(3)
P
21.9
(-1.3)
P
31
(0.9)
P
22.6
(-1.1)
P
33.5
(1.5)
P
25
B 45.2
(3)
P
36.2
(1.6)
P
5.5
(-3)
A
27.3
(0.3)
P
38.4
(2)
P
32.3
(1.1)
P
40
C 44.3
(2.9)
P
44.8
(3)
P
13.1
(-3)
A
37.6
(1.6)
P
28
(-0.2)
P
37.7
(1.7)
P
32
avr 34.7
(1.8)
40.2
(3)
13.5
(-3)
32
(1.2)
29.7
(0.6)
34.5
(1.7)
27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186258_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16271
Sequence Type Exemplar sequence
Representative Public ID C16E9.2A NCBI
Target Description C16E9.2A /REP_DB=WormBase Gene ID /WP=CE08233 /TR=Q18046 /GB=AAC47961.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076773(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_076773 NCBI Caenorhabditis elegans C16E9.2a (C16E9.2) mRNA, complete cds. 11/11 A 
SNAP00000015450 ENSEMBL cdna:SNAP chromosome:CEL140:X:6935715:6938689:1 11/11 None
GENEFINDER00000015456 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6935718:6938689:1 11/11 None
C16E9.2a ENSEMBL cdna:known chromosome:CEL140:X:6935695:6938986:1 gene:C16E9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180967 2 1 NM_076773 186258_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6935714-6938689(+) 100.0 100.0
Public Domain and Genome References
Ensembl C16E9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47961 Hypothetical protein C16E9.2a [Caenorhabditis elegans] ref|NP_509174.1| C16E9.2a [Caenorhabditis elegans] 0.0
blast CAE65822 Hypothetical protein CBG10937 [Caenorhabditis briggsae] 0.0
blast XP_786746 PREDICTED: similar to CG9646-PA [Strongylocentrotus purpuratus] 3.0E-59
blast XP_786746 PREDICTED: similar to CG9646-PA [Strongylocentrotus purpuratus] 3.0E-58
Sequence
Target Sequence
>C. ELEGANS:186258_S_AT
gttgaactggttgcacgtgatcgccagaaaactcgagagtccgttgtctttctcggatca
atacgatatgaaattctgaaacaagtgtatgacactaaagcttcttcgacgtggcagtgg
gcacaaaagttgatgaaagtaggcgatcgacgtcaagaatttgtacgaatgcgcggtccg
cagggcaaaggatatgcggaaatggcggtggcaagagtgcccaactgcggatacgaaacg
ccgctcaccgaaaatcctattgacttttctgagttggcaggagtagaacagtcacttgga
aaacgtcgaatgtcagagacaaatcttgccggcggaacacggatgttcccttctcgttca
attgccactccatctcattcatcgcggggaagacgttggcaaagtgaggcggacactgtg
aaccaatacccc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTTGAACTGGTTGCACGTGATCGCC 541 437 703 Antisense
AAACTCGAGAGTCCGTTGTCTTTCT 124 127 731 Antisense
TAAAGCTTCTTCGACGTGGCAGTGG 363 641 798 Antisense
TACGAATGCGCGGTCCGCAGGGCAA 166 649 866 Antisense
GCAAGAGTGCCCAACTGCGGATACG 403 321 913 Antisense
TGCGGATACGAAACGCCGCTCACCG 541 567 928 Antisense
GCCGCTCACCGAAAATCCTATTGAC 564 283 942 Antisense
GTCAGAGACAAATCTTGCCGGCGGA 453 465 1014 Antisense
GGCGGAACACGGATGTTCCCTTCTC 433 517 1033 Antisense
TCCATCTCATTCATCGCGGGGAAGA 568 589 1071 Antisense
GGCGGACACTGTGAACCAATACCCC 600 531 1110 Antisense
Sequence Source Affymetrix Proprietary Database