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[186257_s_at]

Description C29H12.2 /REP_DB=WormBase Gene ID /WP=CE02516 /TR=Q18315 /GB=AAC46695.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 55      6grp_total > 90      4grp_total > 41      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2067
1 2 3 4 range
A 1088.2
(-3)
P 		3104.1
(3)
P 		2511.5
(1.2)
P 		1947.9
(-0.4)
P 		2016
B 1037
(-3)
P 		2311.9
(3)
P 		2181.4
(2.4)
P 		1878.6
(1)
P 		1275
C 1062.5
(-3)
P 		2533.9
(3)
P 		2296.5
(2)
P 		1408
(-1.6)
P 		1471
avr 1062.6
(-3) 		2650
(3) 		2329.8
(1.8) 		1744.8
(-0.4) 		1587

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 987
1 2 3 4 5 6 range
A 1637
(0.6)
P 		1384.6
(-1.5)
P 		1204.7
(-3)
P 		1921.8
(3)
P 		1921.3
(3)
P 		1568.6
(0)
P 		717
B 1648.1
(-0.9)
P 		1451.1
(-2.4)
P 		1585.1
(-1.4)
P 		2159.4
(3)
P 		1852.5
(0.7)
P 		1370.7
(-3)
P 		789
C 1679.1
(-0.2)
P 		1237.3
(-3)
P 		1581.4
(-0.8)
P 		2191.3
(3)
P 		1929.6
(1.4)
P 		1350.1
(-2.3)
P 		954
avr 1654.7
(-0.6) 		1357.7
(-3) 		1457.1
(-2.2) 		2090.8
(3) 		1901.1
(1.4) 		1429.8
(-2.4) 		733
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 563
1 2 3 4 range
A 396.2
(-1.3)
P 		673.8
(3)
P 		656.6
(2.7)
P 		285.1
(-3)
P 		389
B 330.7
(-3)
P 		571
(3)
P 		505.5
(1.4)
P 		400.3
(-1.3)
P 		240
C 351.7
(-1.8)
P 		728.5
(2.2)
P 		800.4
(3)
P 		237.4
(-3)
P 		563
avr 359.5
(-2.1) 		657.8
(3) 		654.2
(2.9) 		307.6
(-3) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 301.8
(-2.3)
P 		492.4
(1.3)
P 		262.4
(-3)
P 		487.4
(1.3)
P 		579.8
(3)
P 		381.9
(-0.7)
P 		317
B 573.5
(0.1)
P 		483
(-1.4)
P 		384.9
(-3)
P 		572
(0.1)
P 		752.6
(3)
P 		511.1
(-0.9)
P 		368
C 622.4
(3)
P 		377.5
(-3)
P 		402.5
(-2.4)
P 		440.7
(-1.5)
P 		624.4
(3)
P 		452
(-1.2)
P 		247
avr 499.2
(-0) 		451
(-1) 		349.9
(-3) 		500
(-0) 		652.3
(3) 		448.3
(-1) 		302
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186257_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4846
Sequence Type Exemplar sequence
Representative Public ID C29H12.2 NCBI
Target Description C29H12.2 /REP_DB=WormBase Gene ID /WP=CE02516 /TR=Q18315 /GB=AAC46695.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062825 NCBI Caenorhabditis elegans C29H12.2 (C29H12.2) mRNA, complete cds. 11/11 None
SNAP00000038443 ENSEMBL cdna:SNAP chromosome:CEL140:II:6123773:6125041:1 11/11 None
GENEFINDER00000038448 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6123773:6125041:1 11/11 None
C29H12.2.1 ENSEMBL cdna:known chromosome:CEL140:II:6123760:6125377:1 gene:C29H12.2 11/11 None
C29H12.2.3 ENSEMBL cdna:known chromosome:CEL140:II:6123762:6125377:1 gene:C29H12.2 11/11 None
C29H12.2.2 ENSEMBL cdna:known chromosome:CEL140:II:6123768:6125377:1 gene:C29H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6123769-6125038(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29H12.2
Entrez Gene 174022 Entrez gene
SwissProt Q18315 EMBL-EBI
WormBase CE02516 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7648.1.S1_S_AT similar to C29H12.2 cfa
CHICKEN:GGA.10241.1.S1_A_AT similar to chromosome 2 open reading frame 18 gga
HG-U133B:225695_AT chromosome 2 open reading frame 18 hs
HG-U133_PLUS_2:225695_AT chromosome 2 open reading frame 18 hs
HG-U133A:219783_AT chromosome 2 open reading frame 18 hs
HG-U133_PLUS_2:219783_AT chromosome 2 open reading frame 18 hs
HG-U133A_2:219783_AT chromosome 2 open reading frame 18 hs
HU35KSUBA:RC_AA609045_AT chromosome 2 open reading frame 18 hs
U133_X3P:G8923523_3P_AT chromosome 2 open reading frame 18 hs
U133_X3P:HS2.334694.2.S1_3P_X_AT chromosome 2 open reading frame 18 hs
U133_X3P:HS.11759.1.A1_3P_AT chromosome 2 open reading frame 18 hs
HG-U133_PLUS_2:1554444_S_AT chromosome 2 open reading frame 18 hs
HG-U95B:52936_AT chromosome 2 open reading frame 18 hs
HG-U95C:59607_F_AT chromosome 2 open reading frame 18 hs
HG-U95E:74071_AT chromosome 2 open reading frame 18 hs
HG-U133_PLUS_2:242085_AT Chromosome 2 open reading frame 18 hs
HG-U133B:242085_AT Chromosome 2 open reading frame 18 hs
HG-U95D:70350_AT Chromosome 2 open reading frame 18 hs
U133_X3P:HS.209235.0.A1_3P_AT Chromosome 2 open reading frame 18 hs
MG-U74BV2:112827_AT RIKEN cDNA 4930471M23 gene mm
MG-U74BV2:113008_AT RIKEN cDNA 4930471M23 gene mm
MG-U74CV2:170524_F_AT RIKEN cDNA 4930471M23 gene mm
MOE430A:1426220_AT RIKEN cDNA 4930471M23 gene mm
MOUSE430A_2:1426220_AT RIKEN cDNA 4930471M23 gene mm
MOUSE430_2:1426220_AT RIKEN cDNA 4930471M23 gene mm
MOE430A:1434048_AT RIKEN cDNA 4930471M23 gene mm
MOUSE430A_2:1434048_AT RIKEN cDNA 4930471M23 gene mm
MOUSE430_2:1434048_AT RIKEN cDNA 4930471M23 gene mm
MOE430B:1442792_X_AT RIKEN cDNA 4930471M23 gene mm
MOUSE430_2:1442792_X_AT RIKEN cDNA 4930471M23 gene mm
RAE230A:1376502_AT similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) (predicted) rn
RAT230_2:1376502_AT similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) (predicted) rn
RAE230B:1395537_AT similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) (predicted) rn
RAT230_2:1395537_AT similar to putative protein, with at least 9 transmembrane domains, of eukaryotic origin (43.9 kD) (2G415) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC46695 Hypothetical protein C29H12.2 [Caenorhabditis elegans] ref|NP_495226.1| C29H12.2 [Caenorhabditis elegans] 0.0
blast CAE59250 Hypothetical protein CBG02576 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495226.1 9 2-24,39-61,93-115,125-144,151-173,183-205,217-239,270-292,329-351
C29H12.2.1 9 2-24,39-61,93-115,125-144,151-173,183-205,217-239,270-292,329-351
C29H12.2.3 9 2-24,39-61,93-115,125-144,151-173,183-205,217-239,270-292,329-351
C29H12.2.2 9 2-24,39-61,93-115,125-144,151-173,183-205,217-239,270-292,329-351
SNAP00000038443 9 2-24,39-61,93-115,125-144,151-173,183-205,217-239,270-292,329-351
GENEFINDER00000038448 9 2-24,39-61,93-115,125-144,151-173,183-205,217-239,270-292,329-351
Sequence
Target Sequence 
>C. ELEGANS:186257_S_AT
gaaaccttctcatcgtgatggctcagattattgttgccatccaaatggtctacgaacaga
aatatctcacaaaatacgacgtcccggctttgtttgctgttggattggaaggattgttcg
gaatggtcaccttatctattttgatgattccattctactacatccacgtgccaaggacat
tctctactaatccagaaggaagattggaagacgtattttacgcatggaaagaaatcacag
aggaaccaacaatcgcacttgctctctccggaaccgttgtttcaattgctttcttcaatt
tcgcaggagtctctgtcacaaaagaattatccgctaccaccagaatggttcttgattcag
ttcgcacacttgtgatttgggttgtatcaattcctcttttccacgagaaattcattgcta
tccagctctctggattcgccatgctcattcttggaactcttatttacaacgacatactca
tcggcccatggttccgccggaacattcttccaaatctcagctcccacgctaactgtgctc
gttgctggttatgcatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCTTCTCATCGTGATGGCTCA 85 359 572 Antisense
TGATTCCATTCTACTACATCCACGT 76 565 716 Antisense
CCACGTGCCAAGGACATTCTCTACT 342 275 735 Antisense
GAGGAACCAACAATCGCACTTGCTC 372 405 811 Antisense
CTCTCTCCGGAACCGTTGTTTCAAT 307 231 833 Antisense
GCTTTCTTCAATTTCGCAGGAGTCT 669 303 859 Antisense
ATCAATTCCTCTTTTCCACGAGAAA 658 25 957 Antisense
GATTCGCCATGCTCATTCTTGGAAC 187 433 1004 Antisense
TACAACGACATACTCATCGGCCCAT 40 643 1036 Antisense
TTCCGCCGGAACATTCTTCCAAATC 434 697 1063 Antisense
GTGCTCGTTGCTGGTTATGCATCTG 567 479 1106 Antisense
Sequence Source Affymetrix Proprietary Database