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[186254_at]

Description R05H11.1 /REP_DB=WormBase Gene ID /WP=CE01363 /TR=Q21761 /GB=AAA50725.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 70      4grp_total > 55      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 274.3
(3)
P 		107.1
(-1.9)
A 		120.9
(-1.5)
A 		68.3
(-3)
A 		206
B 315.1
(3)
P 		152.9
(-0.9)
A 		146.7
(-1)
P 		62.8
(-3)
A 		252
C 295.7
(3)
P 		69.2
(-3)
A 		133.7
(-1.3)
P 		68.9
(-3)
A 		227
avr 295
(3) 		109.7
(-1.9) 		133.8
(-1.2) 		66.7
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 332.3
(1)
P 		239.6
(-0.6)
P 		303.3
(0.5)
P 		444.6
(3)
P 		249.3
(-0.5)
P 		107.1
(-3)
A 		338
B 271.6
(0.6)
P 		200.6
(-0.6)
P 		225.2
(-0.2)
P 		405.7
(3)
P 		215.8
(-0.4)
P 		65.7
(-3)
A 		340
C 329.5
(1.1)
P 		198.5
(-1)
P 		346.3
(1.4)
P 		449.4
(3)
P 		241
(-0.3)
P 		71.6
(-3)
P 		378
avr 311.1
(0.9) 		212.9
(-0.8) 		291.6
(0.6) 		433.2
(3) 		235.4
(-0.4) 		81.5
(-3) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 99.9
(3)
P 		23.2
(-2.1)
A 		31.6
(-1.6)
A 		10
(-3)
A 		90
B 100.5
(3)
P 		37.8
(-1.3)
A 		34
(-1.6)
P 		13.4
(-3)
A 		87
C 97.9
(3)
P 		19.9
(-2.4)
A 		46.6
(-0.6)
P 		11.6
(-3)
A 		86
avr 99.4
(3) 		27
(-2) 		37.4
(-1.2) 		11.7
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 61.3
(-0.6)
P 		85.2
(1.1)
P 		66
(-0.2)
P 		112.8
(3)
P 		75.2
(0.4)
P 		26.1
(-3)
A 		87
B 94.5
(2.1)
P 		66.8
(0.1)
P 		54.7
(-0.8)
P 		107.5
(3)
P 		87.7
(1.6)
P 		24.5
(-3)
A 		83
C 122.1
(3)
P 		60.6
(-0.8)
P 		88.1
(0.9)
P 		90.4
(1.1)
P 		78
(0.3)
P 		24
(-3)
P 		98
avr 92.6
(2.2) 		70.9
(0.5) 		69.6
(0.4) 		103.6
(3) 		80.3
(1.2) 		24.9
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6345
Sequence Type Exemplar sequence
Representative Public ID R05H11.1 NCBI
Target Description R05H11.1 /REP_DB=WormBase Gene ID /WP=CE01363 /TR=Q21761 /GB=AAA50725.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181979
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181979 NCBI Caenorhabditis elegans R05H11.2 (R05H11.2) mRNA, complete cds. None
SNAP00000011560 ENSEMBL cdna:SNAP chromosome:CEL140:III:6798393:6799919:1 None
GENEFINDER00000011562 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6798393:6799919:1 None
R05H11.2 ENSEMBL cdna:known chromosome:CEL140:III:6798720:6799919:1 gene:R05H11.2 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066081 3/11 Cross Hyb Matching Probes None
SNAP00000011559 3/11 Cross Hyb Matching Probes None
GENEFINDER00000011561 3/11 Cross Hyb Matching Probes None
R05H11.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6795569-6799918(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05H11.2
Entrez Gene 353418 Entrez gene
WormBase CE32703 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16695 hypothetical protein R05H11.1 - Caenorhabditis elegans 6.0E-62
blast AAN65309 Hypothetical protein R05H11.2 [Caenorhabditis elegans] 7.0E-62
blast NP_871708 R05H11.2 [Caenorhabditis elegans] 3.0E-55
blast AAN65309 Hypothetical protein R05H11.2 [Caenorhabditis elegans] 3.0E-55
blast T16695 hypothetical protein R05H11.1 - Caenorhabditis elegans 3.0E-55
Sequence
Target Sequence 
>C. ELEGANS:186254_AT
ttctgcgagatgacggacgcctggccactattttattctacgggaagaagctctactttc
tcgtttggaaagaccgttttccatacaaaacaatcaaagatgcgaagaaacaacaaaagg
aacggaaagtcaagaaaaagttgaccagagctctcaatgatgcattgcgtgatctaaatg
acacctacttctaccatccttatcgtcaacgaaaaaactcgaccacctcgacctattcgg
attgttcaagtgtgtcaggaagtccttcaagttccacaatgacgtcttcgcctccacctc
aaaacttttttaacatctacgatcgcttgaaggagtatatcagcgaagttccaaaggatc
cagttgtttgtcaaatcctactcgacagcctcgcccaaatcatcgagctcgagcgccaac
tcgccgatctggaacaaaaaacggaagatctgaaaatgcggcaatcaaacactccaacta
catccgccaaatggtaccatgagaaggttccggaagaccttatcaatgtggatgtgactg
aatttaagcatctcgttcattcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGCGAGATGACGGACGCCTGGC 334 691 872 Antisense
GCCTGGCCACTATTTTATTCTACGG 697 281 890 Antisense
GAAGAAGCTCTACTTTCTCGTTTGG 218 341 915 Antisense
GATCTAAATGACACCTACTTCTACC 173 419 1042 Antisense
TCTACCATCCTTATCGTCAACGAAA 272 615 1061 Antisense
CCACCTCGACCTATTCGGATTGTTC 450 273 1094 Antisense
TCAAGTTCCACAATGACGTCTTCGC 88 633 1138 Antisense
TTGTCAAATCCTACTCGACAGCCTC 166 707 1239 Antisense
GCCAACTCGCCGATCTGGAACAAAA 226 277 1286 Antisense
ACTCCAACTACATCCGCCAAATGGT 371 99 1342 Antisense
AATTTAAGCATCTCGTTCATTCAGC 16 175 1412 Antisense
Sequence Source Affymetrix Proprietary Database