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[186253_at]

Description F09E10.1 /REP_DB=WormBase Gene ID /WP=CE04337 /TR=Q19252 /GB=AAB52487.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 21.5
(-2.9)
A 		18.7
(-3)
A 		53.9
(-2.2)
A 		285.7
(3)
P 		267
B 44.6
(-2.5)
A 		34.9
(-3)
A 		35.9
(-2.9)
A 		147.3
(3)
P 		112
C 13.8
(-3)
A 		56.8
(-1.9)
A 		31.5
(-2.6)
A 		257.2
(3)
P 		243
avr 26.6
(-3) 		36.8
(-2.7) 		40.4
(-2.6) 		230.1
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 49.9
(3)
A 		24.4
(-3)
A 		27.5
(-2.3)
A 		27.6
(-2.2)
A 		38.2
(0.2)
A 		24.6
(-3)
A 		26
B 39.3
(2.9)
A 		33.7
(2)
A 		38.1
(2.7)
A 		5.1
(-3)
A 		10.5
(-2.1)
A 		39.6
(3)
A 		35
C 34.6
(-0)
A 		49.8
(1.8)
A 		10.5
(-3)
A 		39
(0.5)
A 		59.2
(3)
A 		26.8
(-1)
A 		49
avr 41.3
(3) 		36
(1.2) 		25.4
(-2.5) 		23.9
(-3) 		36
(1.2) 		30.3
(-0.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 7.8
(-2.4)
A 		4.1
(-3)
A 		14.1
(-1.4)
A 		41.8
(3)
P 		38
B 14.2
(-1.5)
A 		8.6
(-2.9)
A 		8.3
(-3)
A 		31.4
(3)
P 		23
C 4.6
(-3)
A 		16.3
(-1.2)
A 		11
(-2)
A 		43.4
(3)
P 		39
avr 8.9
(-3) 		9.7
(-2.8) 		11.1
(-2.6) 		38.9
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.2
(0.5)
A 		8.7
(-0.1)
A 		6
(-3)
A 		7
(-1.9)
A 		11.5
(3)
A 		6
(-3)
A 		6
B 13.7
(2.5)
A 		11.2
(1.4)
A 		9.2
(0.5)
A 		1.3
(-3)
A 		4.3
(-1.7)
A 		14.8
(3)
A 		14
C 12.8
(0.7)
A 		15.2
(1.6)
A 		2.7
(-3)
A 		7.8
(-1.1)
A 		19.1
(3)
A 		9
(-0.7)
A 		16
avr 11.9
(3) 		11.7
(2.8) 		6
(-2.4) 		5.4
(-3) 		11.6
(2.7) 		9.9
(1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18584
Sequence Type Exemplar sequence
Representative Public ID F09E10.1 NCBI
Target Description F09E10.1 /REP_DB=WormBase Gene ID /WP=CE04337 /TR=Q19252 /GB=AAB52487.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075885
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F09E10.1 ENSEMBL cdna:known chromosome:CEL140:X:1502881:1503214:1 gene:F09E10.1 None
NM_075885 NCBI Caenorhabditis elegans F09E10.1 (F09E10.1) mRNA, complete cds. None
SNAP00000026365 ENSEMBL cdna:SNAP chromosome:CEL140:X:1502881:1503214:1 None
GENEFINDER00000026371 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1502908:1503214:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1502880-1503603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E10.1
Entrez Gene 180489 Entrez gene
SwissProt Q19252 EMBL-EBI
WormBase CE29254 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52487 Hypothetical protein F09E10.1 [Caenorhabditis elegans] ref|NP_508286.1| F09E10.1 [Caenorhabditis elegans] 5.0E-49
blast AAB52487 Hypothetical protein F09E10.1 [Caenorhabditis elegans] ref|NP_508286.1| F09E10.1 [Caenorhabditis elegans] 9.0E-44
Sequence
Target Sequence 
>C. ELEGANS:186253_AT
tcatcgttctaatcatgctcgcagcattctcaatgagagaaaatgggctcccaggagaaa
gtcttaacgaccttgccattggatcagcaactcatcaagggaaaaactggctgaagaacg
gacggtgggggcccacccaacaccccggtcacgaagagctcgatcgccctcccaatggcc
gacgtgcccccaccgtcgcctgtgagcccaccgaagaaatgatgatgatgccatatataa
ttgttgcggcggaatcaactggacccttgaaatggggatttgaaatttttccagattatt
tttcagatgaattgaaaaaatcggacaaaaacacccgaaaaaaccaacctttttctaaaa
aagttcattcagaaagttttagattccagattgtttgtctactcttgagctatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCGTTCTAATCATGCTCGCAGC 351 619 26 Antisense
ATGCTCGCAGCATTCTCAATGAGAG 298 43 40 Antisense
GGGCTCCCAGGAGAAAGTCTTAACG 223 1 70 Antisense
GTCTTAACGACCTTGCCATTGGATC 99 467 86 Antisense
GCCATTGGATCAGCAACTCATCAAG 398 281 100 Antisense
AACTGGCTGAAGAACGGACGGTGGG 343 143 130 Antisense
GCCTGTGAGCCCACCGAAGAAATGA 374 283 223 Antisense
GTTGCGGCGGAATCAACTGGACCCT 104 441 268 Antisense
CTGGACCCTTGAAATGGGGATTTGA 96 215 284 Antisense
GATTCCAGATTGTTTGTCTACTCTT 24 435 407 Antisense
GTTTGTCTACTCTTGAGCTATCTGA 702 451 418 Antisense
Sequence Source Affymetrix Proprietary Database