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[186252_s_at]

Description Y116A8B.1 /REP_DB=WormBase Gene ID /WP=CE16679 /TR=O62401 /GB=CAA16287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 13.4
(-2.9)
A 		12.5
(-3)
A 		20.1
(-2)
A 		59
(3)
A 		47
B 16.9
(-0.1)
A 		7.1
(-3)
A 		13.7
(-1.1)
A 		27.7
(3)
A 		21
C 13.7
(1.7)
A 		5.5
(-2.3)
A 		4.1
(-3)
A 		16.3
(3)
A 		12
avr 14.7
(-1.5) 		8.4
(-3) 		12.6
(-2) 		34.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 30
(-0.6)
A 		4.4
(-3)
A 		4.7
(-3)
A 		33.1
(-0.4)
A 		13.5
(-2.2)
A 		69.7
(3)
A 		65
B 10.3
(-1.1)
A 		5.6
(-3)
A 		20.5
(3)
A 		12.7
(-0.1)
A 		10.2
(-1.1)
A 		19.9
(2.8)
A 		15
C 5.2
(-3)
A 		6.7
(-2.8)
A 		25.7
(0.2)
A 		43.3
(3)
A 		9.3
(-2.4)
A 		13.2
(-1.7)
A 		38
avr 15.2
(-1) 		5.6
(-3) 		17
(-0.6) 		29.7
(2) 		11
(-1.9) 		34.3
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.9
(-0.8)
A 		2.7
(-3)
A 		5.3
(-0.4)
A 		8.6
(3)
A 		6
B 5.4
(2.3)
A 		1.8
(-3)
A 		3.2
(-1)
A 		5.9
(3)
A 		4
C 4.5
(3)
A 		1.6
(-2.6)
A 		1.4
(-3)
A 		2.8
(-0.3)
A 		3
avr 4.9
(1.6) 		2
(-3) 		3.3
(-0.9) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.5
(-1.3)
A 		1.6
(-2.8)
A 		1
(-3)
A 		8.4
(-0.2)
A 		4.1
(-1.8)
A 		17
(3)
A 		16
B 3.6
(-1.1)
A 		1.9
(-3)
A 		5
(0.4)
A 		3.4
(-1.4)
A 		4.1
(-0.6)
A 		7.4
(3)
A 		6
C 1.9
(-3)
A 		2.1
(-2.8)
A 		6.5
(1.1)
A 		8.7
(3)
A 		3
(-2)
A 		4.4
(-0.8)
A 		7
avr 3.7
(-1.6) 		1.9
(-3) 		4.2
(-1.2) 		6.8
(0.8) 		3.7
(-1.6) 		9.6
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186252_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10113
Sequence Type Exemplar sequence
Representative Public ID Y116A8B.1 NCBI
Target Description Y116A8B.1 /REP_DB=WormBase Gene ID /WP=CE16679 /TR=O62401 /GB=CAA16287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061099(11), NM_070652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061099 NCBI Caenorhabditis elegans F49B2.3 (F49B2.3) mRNA, complete cds. 11/11 A 
NM_070652 NCBI Caenorhabditis elegans Y116A8B.1 (Y116A8B.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000010613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14319127:14328015:1 11/11 None
SNAP00000010605 ENSEMBL cdna:SNAP chromosome:CEL140:I:14319881:14320799:1 10/11 None
SNAP00000044302 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17216749:17217164:1 11/11 None
GENEFINDER00000044311 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17216256:17218309:1 11/11 None
F49B2.3 ENSEMBL cdna:known chromosome:CEL140:I:14319127:14320989:1 gene:F49B2.3 11/11 A 
Y116A8B.1 ENSEMBL cdna:known chromosome:CEL140:IV:17216256:17217307:1 gene:Y116A8B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17216261-17217313(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F49B2.3
Y116A8B.1
Entrez Gene 178500 Entrez gene
186010 Entrez gene
SwissProt O45537 EMBL-EBI
O62401 EMBL-EBI
WormBase CE16074 Wormbase
CE16679 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-150
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-144
blast CAA16287 Hypothetical protein Y116A8B.1 [Caenorhabditis elegans] ref|NP_503053.1| Y116A8B.1 [Caenorhabditis elegans] 1.0E-109
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-41
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493500.1 1 288-305
F49B2.3 1 288-305
GENEFINDER00000044311 2 153-175,196-218
Sequence
Target Sequence 
>C. ELEGANS:186252_S_AT
cgaccaagtcgtcccaggttgggagtgggagagagccgacgagctcaaccaggccttgag
gaggctgggcctcgtggagctcgggaccatcgcccacgacacagtgcggggaatactacg
cttctaccccggagacggccgcacgcctgtgcgccacaatgggcagatggcccccgtgag
gaccgtgtacgcccggtcgtacacaaccgagctccgccacgagcggtggagcttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACCAAGTCGTCCCAGGTTGGGAG 473 251 154 Antisense
AGTCGTCCCAGGTTGGGAGTGGGAG 116 1 160 Antisense
GGGAGTGGGAGAGAGCCGACGAGCT 435 495 174 Antisense
GAGAGAGCCGACGAGCTCAACCAGG 385 395 182 Antisense
ACGAGCTCAACCAGGCCTTGAGGAG 175 93 192 Antisense
AACCAGGCCTTGAGGAGGCTGGGCC 146 135 200 Antisense
GTGCGGGGAATACTACGCTTCTACC 129 477 257 Antisense
CACAATGGGCAGATGGCCCCCGTGA 610 191 308 Antisense
GTGTACGCCCGGTCGTACACAACCG 442 483 338 Antisense
AGCTCCGCCACGAGCGGTGGAGCTT 633 79 363 Antisense
TCCGCCACGAGCGGTGGAGCTTGGT 672 595 366 Antisense
Sequence Source Affymetrix Proprietary Database