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[186251_at]

Description Y116A8B.1 /REP_DB=WormBase Gene ID /WP=CE16679 /TR=O62401 /GB=CAA16287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 10.4
(-2.2)
A 		6.6
(-3)
A 		22.3
(0.2)
A 		35.7
(3)
A 		29
B 4.3
(-2.8)
A 		38.7
(1.8)
A 		2.8
(-3)
A 		48.1
(3)
A 		45
C 10.2
(-2.7)
A 		32.3
(1.3)
A 		8.5
(-3)
A 		42.1
(3)
A 		34
avr 8.3
(-3) 		25.9
(0.1) 		11.2
(-2.5) 		42
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 2
(-3)
A 		20.7
(-0)
A 		23.1
(0.4)
A 		4
(-2.7)
A 		39.7
(3)
A 		7.8
(-2.1)
A 		38
B 4.9
(-2.2)
A 		28.9
(3)
A 		2
(-2.8)
A 		1.1
(-3)
A 		4.3
(-2.3)
A 		5
(-2.2)
A 		28
C 7.5
(3)
A 		6.2
(1.3)
A 		4
(-1.6)
A 		3.1
(-2.7)
A 		2.9
(-3)
A 		2.9
(-3)
A 		5
avr 4.8
(-2.2) 		18.6
(3) 		9.7
(-0.4) 		2.7
(-3) 		15.6
(1.9) 		5.2
(-2.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.8
(0.3)
A 		1.4
(-3)
A 		5.8
(3)
A 		5.2
(2.2)
A 		4
B 1.4
(-2.5)
A 		9.6
(2.6)
A 		0.6
(-3)
A 		10.2
(3)
A 		10
C 3.4
(-2.6)
A 		9.3
(3)
A 		3
(-3)
A 		7.1
(0.9)
A 		6
avr 2.9
(-3) 		6.8
(2.1) 		3.1
(-2.7) 		7.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		7.4
(0.6)
A 		5
(-0.6)
A 		1
(-2.7)
A 		12
(3)
A 		1.9
(-2.2)
A 		12
B 1.7
(-2.1)
A 		9.6
(3)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		1.7
(-2.1)
A 		1.9
(-2)
A 		9
C 2.8
(3)
A 		1.9
(0.5)
A 		1
(-1.9)
A 		0.6
(-3)
A 		0.9
(-2.2)
A 		1
(-1.9)
A 		2
avr 1.6
(-1.9) 		6.3
(3) 		2.2
(-1.3) 		0.6
(-3) 		4.9
(1.5) 		1.6
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10113
Sequence Type Exemplar sequence
Representative Public ID Y116A8B.1 NCBI
Target Description Y116A8B.1 /REP_DB=WormBase Gene ID /WP=CE16679 /TR=O62401 /GB=CAA16287.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070652 NCBI Caenorhabditis elegans Y116A8B.1 (Y116A8B.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000044311 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17216256:17218309:1 11/11 None
Y116A8B.1 ENSEMBL cdna:known chromosome:CEL140:IV:17216256:17217307:1 gene:Y116A8B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044302 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17216261-17217313(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8B.1
Entrez Gene 178500 Entrez gene
SwissProt O62401 EMBL-EBI
WormBase CE16679 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16287 Hypothetical protein Y116A8B.1 [Caenorhabditis elegans] ref|NP_503053.1| Y116A8B.1 [Caenorhabditis elegans] 1.0E-109
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044311 2 153-175,196-218
Sequence
Target Sequence 
>C. ELEGANS:186251_AT
attctatttattttgcagggcgactggtggttgccctctcttatttcttctgattctcat
tttctttcattcaagttatgtttgatttccacagatgatcccagcacccctctttctcga
ccaagtcgtcccaggttgggagtgggagagagccgacgagctcaaccaggccttgaggag
gctgggcctcgtggagctcgggaccatcgcccacgacacagtgcggggaatactacgctt
ctaccccggagacggccgcacgcctgtgcgccacaatgggcagatggcccccgtgaggac
cgtgtacgcccggtcgtacacaaccgagctccgccacgagcggtggagcttggtgtatct
ggaagggtggggggcaccacgcgctttgttccctgtggagaccctcacctacctgcggca
ttcgagaatacgatcttggaggcgcctttcggagtgatagcgataactttttttgggaca
gacatgatctggagatgtttcaagaaatttcaaacgaaaaaatcacgttctggaatgaaa
cgagtgctgcgaaaactgtggatttcctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTATTTATTTTGCAGGGCGACT 641 5 37 Antisense
CTCTCTTATTTCTTCTGATTCTCAT 393 231 72 Antisense
TCTCATTTTCTTTCATTCAAGTTAT 380 613 91 Antisense
TGATTTCCACAGATGATCCCAGCAC 149 565 119 Antisense
GCGGTGGAGCTTGGTGTATCTGGAA 267 293 376 Antisense
TCTGGAAGGGTGGGGGGCACCACGC 147 605 394 Antisense
CACCTACCTGCGGCATTCGAGAATA 516 201 442 Antisense
GAATACGATCTTGGAGGCGCCTTTC 581 325 462 Antisense
GAGGCGCCTTTCGGAGTGATAGCGA 164 405 475 Antisense
AACTTTTTTTGGGACAGACATGATC 96 139 501 Antisense
GCTGCGAAAACTGTGGATTTCCTAC 422 295 582 Antisense
Sequence Source Affymetrix Proprietary Database