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[186250_s_at]

Description C32D5.12 /REP_DB=WormBase Gene ID /WP=CE01841 /TR=Q09491 /GB=AAC46799.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 55      6grp_total > 74      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 971
1 2 3 4 range
A 187.3
(-3)
P 		1001.7
(3)
P 		993.8
(2.9)
P 		306
(-2.1)
P 		814
B 225.7
(-3)
P 		1128.1
(3)
P 		805.7
(0.9)
P 		300.9
(-2.5)
P 		902
C 216.6
(-3)
P 		1157.8
(3)
P 		1063.9
(2.4)
P 		337.7
(-2.2)
P 		941
avr 209.9
(-3) 		1095.9
(3) 		954.5
(2) 		314.9
(-2.3) 		886

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1864
1 2 3 4 5 6 range
A 515.1
(-3)
P 		719.6
(-2.3)
P 		1797.7
(1.2)
P 		2349.5
(3)
P 		1457.4
(0.1)
P 		1638.5
(0.7)
P 		1834
B 750.4
(-2.7)
P 		658.4
(-3)
P 		1659.1
(0.5)
P 		2379.4
(3)
P 		1397.2
(-0.4)
P 		1932.5
(1.4)
P 		1721
C 720.4
(-2.5)
P 		584.7
(-3)
P 		1656.4
(0.6)
P 		2374.4
(3)
P 		1396.9
(-0.3)
P 		1619
(0.5)
P 		1790
avr 662
(-3) 		654.2
(-3) 		1704.4
(0.7) 		2367.8
(3) 		1417.2
(-0.3) 		1730
(0.8) 		1714
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 68.2
(-2.3)
P 		217.4
(1.8)
P 		259.8
(3)
P 		44.8
(-3)
P 		215
B 72
(-2.8)
P 		278.6
(3)
P 		186.7
(0.4)
P 		64.1
(-3)
P 		215
C 71.7
(-2.7)
P 		332.9
(2.3)
P 		370.8
(3)
P 		56.9
(-3)
P 		314
avr 70.6
(-2.6) 		276.3
(3) 		272.4
(2.9) 		55.3
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 626
1 2 3 4 5 6 range
A 95
(-3)
P 		255.9
(-1.1)
P 		391.5
(0.6)
P 		595.9
(3)
P 		439.8
(1.1)
P 		398.9
(0.6)
P 		501
B 261.1
(-2.5)
P 		219.2
(-3)
P 		402.9
(-0.8)
P 		630.2
(1.9)
P 		567.7
(1.2)
P 		720.6
(3)
P 		501
C 267
(-1.5)
P 		178.4
(-3)
P 		421.6
(1)
P 		477.5
(1.9)
P 		452
(1.5)
P 		542
(3)
P 		364
avr 207.7
(-3) 		217.8
(-2.8) 		405.3
(0.3) 		567.9
(3) 		486.5
(1.6) 		553.8
(2.8) 		360
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186250_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4063
Sequence Type Exemplar sequence
Representative Public ID C32D5.12 NCBI
Target Description C32D5.12 /REP_DB=WormBase Gene ID /WP=CE01841 /TR=Q09491 /GB=AAC46799.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062879 NCBI Caenorhabditis elegans C32D5.12 (C32D5.12) mRNA, complete cds. 11/11 None
C32D5.12 ENSEMBL cdna:known chromosome:CEL140:II:6356385:6358952:-1 gene:C32D5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015728 6/11 Cross Hyb Matching Probes None
GENEFINDER00000015734 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6356466-6358945(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.12
Entrez Gene 174053 Entrez gene
SwissProt Q09491 EMBL-EBI
WormBase CE01841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46799 Hypothetical protein C32D5.12 [Caenorhabditis elegans] ref|NP_495280.1| C32D5.12 [Caenorhabditis elegans] 0.0
blast CAE59301 Hypothetical protein CBG02636 [Caenorhabditis briggsae] 1.0E-161
blast NP_671662 EVM143 [Ectromelia virus] gb|AAM92448.1| EVM143 [Ectromelia virus] 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:186250_S_AT
gaattctgctctaccatttgtaactggagaacgacgaggaatgcatcaatttatatatgc
tggaaacctagctgcaatcgctgaaaaatcatttttcggattaatttacaattcgaaaag
attgaatggagaaattgtgttctgtatggatgagaactgtgctcattcaatcagagattt
tttcgaaagtcgttttcttaatccaaattactgtcaagaagtagctgtcagttattggcc
atcatttgccacttcgtacttaaactattggaagaatatgcttggattcaagatcccaga
aaacattctaaatcacgttgcattccgtttgttctttgagaaaactgttggatttcctaa
taagaaactgcgcctgttattgaattctaaaccggaaatctcacaagaagaggcattcaa
attgtacgcgaactccaaagcttcgtattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTGCTCTACCATTTGTAACT 70 325 600 Antisense
GCTGGAAACCTAGCTGCAATCGCTG 230 295 658 Antisense
AGAACTGTGCTCATTCAATCAGAGA 229 73 752 Antisense
GTAGCTGTCAGTTATTGGCCATCAT 605 457 820 Antisense
TTGGCCATCATTTGCCACTTCGTAC 205 705 834 Antisense
TTGCCACTTCGTACTTAAACTATTG 139 701 845 Antisense
ACATTCTAAATCACGTTGCATTCCG 533 105 902 Antisense
GTTGCATTCCGTTTGTTCTTTGAGA 630 439 916 Antisense
GAAACTGCGCCTGTTATTGAATTCT 521 357 963 Antisense
GGCATTCAAATTGTACGCGAACTCC 293 535 1011 Antisense
GCGAACTCCAAAGCTTCGTATTCGA 502 287 1027 Antisense
Sequence Source Affymetrix Proprietary Database