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[186249_at]

Description C03A7.12 /REP_DB=WormBase Gene ID /WP=CE07870 /TR=O16507 /GB=AAB66006.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 19.4
(-2.4)
A 		15.2
(-2.6)
A 		6.6
(-3)
A 		125.8
(3)
A 		119
B 17.5
(-2.8)
A 		19.1
(-2.8)
A 		14.1
(-3)
A 		142.7
(3)
P 		129
C 27.7
(-1)
A 		16.7
(-3)
A 		23.5
(-1.7)
A 		49.2
(3)
A 		33
avr 21.5
(-2.6) 		17
(-2.8) 		14.7
(-3) 		105.9
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 18.5
(-2.6)
A 		4.3
(-3)
A 		31.3
(-2.2)
A 		57.1
(-1.3)
A 		65.8
(-1.1)
P 		196.2
(3)
P 		192
B 24.4
(-2.5)
A 		32.2
(-2.3)
A 		12
(-3)
A 		79
(-0.6)
A 		74.8
(-0.7)
P 		177.1
(3)
P 		165
C 39.9
(-2)
A 		58.9
(-0.8)
P 		23.6
(-3)
A 		53.4
(-1.1)
A 		29.6
(-2.6)
P 		118.1
(3)
P 		95
avr 27.6
(-2.8) 		31.8
(-2.6) 		22.3
(-3) 		63.2
(-1.3) 		56.7
(-1.5) 		163.8
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 7
(-1.1)
A 		3.3
(-2.4)
A 		1.7
(-3)
A 		18.4
(3)
A 		17
B 5.6
(-2.5)
A 		4.7
(-2.7)
A 		3.3
(-3)
A 		30.4
(3)
P 		27
C 9.2
(3)
A 		4.8
(-3)
A 		8.2
(1.6)
A 		8.3
(1.8)
A 		4
avr 7.3
(-1.8) 		4.3
(-3) 		4.4
(-3) 		19
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 3.4
(-2.8)
A 		1.5
(-3)
A 		6.8
(-2.3)
A 		14.5
(-1.3)
A 		19.8
(-0.6)
P 		47.8
(3)
P 		46
B 8.5
(-2.5)
A 		10.7
(-2.3)
A 		2.9
(-3)
A 		20.9
(-1.3)
A 		30.4
(-0.4)
P 		66
(3)
P 		63
C 14.8
(-1.4)
A 		18
(-0.9)
P 		6
(-3)
A 		10.7
(-2.2)
A 		9.6
(-2.4)
P 		39.5
(3)
P 		34
avr 8.9
(-2.5) 		10.1
(-2.4) 		5.2
(-3) 		15.4
(-1.7) 		19.9
(-1.1) 		51.1
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15796
Sequence Type Exemplar sequence
Representative Public ID C03A7.12 NCBI
Target Description C03A7.12 /REP_DB=WormBase Gene ID /WP=CE07870 /TR=O16507 /GB=AAB66006.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071988(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071988 NCBI Caenorhabditis elegans C03A7.12 (C03A7.12) mRNA, complete cds. 9/11 None
C03A7.12 ENSEMBL cdna:known chromosome:CEL140:V:5178192:5181268:-1 gene:C03A7.12 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035284 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035303 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5178191-5179435(-) 67.82 67.82
Public Domain and Genome References
Gene Title
Ensembl C03A7.12
Entrez Gene 182142 Entrez gene
SwissProt O16507 EMBL-EBI
WormBase CE29019 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66006 Hypothetical protein C03A7.12 [Caenorhabditis elegans] ref|NP_504389.1| C03A7.12 [Caenorhabditis elegans] 1.0E-147
blast AAB66005 Udp-glucuronosyltransferase protein 51 [Caenorhabditis elegans] ref|NP_504388.2| C03A7.11 [Caenorhabditis elegans] 2.0E-75
blast CAE64090 Hypothetical protein CBG08696 [Caenorhabditis briggsae] 2.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504389.1 1 216-238
C03A7.12 1 216-238
Sequence
Target Sequence 
>C. ELEGANS:186249_AT
gttccaacacagtctgctattttgagttttttgagtgggggaaatcgtcgaacggaaaat
gctagagcaattttctcagtatcgatcaattttccaggtgtctatcctcgatatgcagtt
cggaattttgtgaaggtgtttaaaaagtacccagaatacgcattcctatggaaatataat
gtgcaacctggagaggagaagctgttcgagaatgttggaaatgtaattttgttggattgg
ttgccacagacagatttgttatacgatccacgtgtcattggttttatttcacacgttggt
ttgaactcattcagtgaagcttcttattctggaaaacctataattgcaatccctctattt
gctgatcaaccttataacgcaagaaatgttgaaaagcctacaaatccaaagaaacgattt
gttgaatggatggaatacgctgcagcaaatccaggacttcataaaatatttgcacttccc
ggagcaaaaatggggattatcgagtattattgtgtggatactattgtttttgtaatttta
attgggatctctactttttatatcttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAACACAGTCTGCTATTTTGA 42 441 166 Antisense
TGAGTGGGGGAAATCGTCGAACGGA 629 541 197 Antisense
GTATCGATCAATTTTCCAGGTGTCT 621 453 244 Antisense
CCAGGTGTCTATCCTCGATATGCAG 133 273 259 Antisense
GTTGGATTGGTTGCCACAGACAGAT 332 437 396 Antisense
TGTTATACGATCCACGTGTCATTGG 2 563 422 Antisense
GTCATTGGTTTTATTTCACACGTTG 349 467 439 Antisense
AACCTATAATTGCAATCCCTCTATT 658 145 500 Antisense
TCCCTCTATTTGCTGATCAACCTTA 180 597 515 Antisense
TACGCTGCAGCAAATCCAGGACTTC 246 649 601 Antisense
GGATCTCTACTTTTTATATCTTGAC 672 511 710 Antisense
Sequence Source Affymetrix Proprietary Database