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[186246_at]

Description W06A11.3 /REP_DB=WormBase Gene ID /WP=CE05041 /TR=Q23182 /GB=AAA82411.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 5.4
(-3)
A 		54.5
(-0.1)
A 		8.4
(-2.8)
A 		108.7
(3)
A 		103
B 23
(-1.3)
A 		5.5
(-3)
A 		35.6
(-0)
A 		66.6
(3)
A 		61
C 44.8
(-1.7)
A 		35
(-2.2)
A 		19.4
(-3)
A 		134.4
(3)
A 		115
avr 24.4
(-2.8) 		31.7
(-2.2) 		21.1
(-3) 		103.2
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.8
(-1.7)
A 		6.9
(-2.8)
A 		14
(-1.1)
A 		19.3
(0.1)
A 		6.2
(-3)
A 		31.4
(3)
A 		25
B 3.6
(-3)
A 		20.3
(-0.4)
A 		5.2
(-2.8)
A 		42.1
(3)
A 		19.6
(-0.5)
A 		23.3
(0.1)
A 		39
C 25.2
(1.3)
A 		33.8
(3)
A 		26.1
(1.5)
A 		7.8
(-2.2)
A 		3.8
(-3)
A 		4.3
(-2.9)
A 		30
avr 13.5
(-1.4) 		20.3
(1.7) 		15.1
(-0.6) 		23.1
(3) 		9.9
(-3) 		19.7
(1.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2
(-3)
A 		11.8
(1.2)
A 		2.2
(-2.9)
A 		15.9
(3)
A 		14
B 7.3
(-0.2)
A 		1.3
(-3)
A 		8.3
(0.3)
A 		14.2
(3)
A 		13
C 14.8
(0)
A 		10.1
(-1.7)
A 		6.7
(-3)
A 		22.7
(3)
A 		16
avr 8
(-1.8) 		7.7
(-2) 		5.7
(-3) 		17.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.2
(-2.7)
A 		2.5
(-2.4)
A 		3.1
(-1.7)
A 		4.9
(0.2)
A 		1.9
(-3)
A 		7.6
(3)
A 		6
B 1.3
(-3)
A 		6.8
(0.3)
A 		1.3
(-3)
A 		11.2
(3)
A 		8
(1.1)
A 		8.7
(1.5)
A 		10
C 9.3
(2.3)
A 		10.3
(3)
A 		6.6
(0.6)
A 		1.6
(-2.7)
A 		1.2
(-3)
A 		1.4
(-2.9)
A 		9
avr 4.3
(-1.7) 		6.5
(3) 		3.7
(-3) 		5.9
(1.7) 		3.7
(-3) 		5.9
(1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5719
Sequence Type Exemplar sequence
Representative Public ID W06A11.3 NCBI
Target Description W06A11.3 /REP_DB=WormBase Gene ID /WP=CE05041 /TR=Q23182 /GB=AAA82411.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062316 NCBI Caenorhabditis elegans W06A11.3 (W06A11.3) mRNA, complete cds. 11/11 None
W06A11.3 ENSEMBL cdna:known chromosome:CEL140:II:4062351:4064051:-1 gene:W06A11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019979 8/11 Cross Hyb Matching Probes None
GENEFINDER00000019983 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4062349-4064050(-) 81.93 100.0
Public Domain and Genome References
Gene Title
Ensembl W06A11.3
Entrez Gene 189234 Entrez gene
SwissProt Q23182 EMBL-EBI
WormBase CE05041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82411 Hypothetical protein W06A11.3 [Caenorhabditis elegans] ref|NP_494717.1| W06A11.3 [Caenorhabditis elegans] 1.0E-140
blast CAB03811 Hypothetical protein B0462.3 [Caenorhabditis elegans] ref|NP_507586.1| B0462.3 [Caenorhabditis elegans] 4.0E-16
blast CAB04164 Hypothetical protein F21D9.5 [Caenorhabditis elegans] ref|NP_507744.1| F21D9.5 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186246_AT
atagttcttcgaaaacaacctggtgtttgtttaatgtattgtcatgtgtcggcggaagta
gaatattctgagaagaactttgtcccagtcagtgtgaagattaaggtgggagcaagagat
tatctacttcattttgtggatgttttaaacaatccgcatattgatgttgtgtatgaggag
ggagacgattcgcttgcagattttccaattcgagtattgacgtgtagaaatgttcaatcg
cagaacaaagtccttcaagatgctatgaacaacgctaaaaatttaagaatgtttggtcca
actccaccatatcactcgtctcatcaagttctatttaaaaacttttatgagaaacttttc
gataaactttcgatatgtttcgataggttggaatgcgtggaacacattcaagtcgacaag
gaaagaatagtacttccacttccagcaaataaagcttttggaagtttagacgagaacgtc
tttaaccacactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGTTCTTCGAAAACAACCTGGTG 37 23 169 Antisense
GTATTGTCATGTGTCGGCGGAAGTA 39 453 204 Antisense
GAAGAACTTTGTCCCAGTCAGTGTG 226 341 240 Antisense
AACAATCCGCATATTGATGTTGTGT 122 135 316 Antisense
GAGGAGGGAGACGATTCGCTTGCAG 622 403 343 Antisense
TTCGCTTGCAGATTTTCCAATTCGA 594 695 357 Antisense
CAATCGCAGAACAAAGTCCTTCAAG 502 179 403 Antisense
TAAGAATGTTTGGTCCAACTCCACC 618 637 452 Antisense
GCGTGGAACACATTCAAGTCGACAA 96 293 563 Antisense
ATAGTACTTCCACTTCCAGCAAATA 670 21 595 Antisense
ACGAGAACGTCTTTAACCACACTGC 113 93 638 Antisense
Sequence Source Affymetrix Proprietary Database