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[186244_s_at]

Description R01B10.5 /REP_DB=WormBase Gene ID /WP=CE26750 /TR=O61976 /GB=AAC17769.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 393.7
(-0)
P 		292.8
(-3)
P 		298.6
(-2.8)
P 		495.4
(3)
P 		203
B 345.6
(-0.2)
P 		314.9
(-0.8)
P 		205.6
(-3)
P 		501.2
(3)
P 		296
C 391
(-1.5)
P 		353.7
(-3)
P 		376
(-2.1)
P 		508
(3)
P 		154
avr 376.8
(-0.6) 		320.5
(-2.2) 		293.4
(-3) 		501.5
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 469.7
(1.5)
P 		388.2
(-0.3)
P 		267.3
(-3)
P 		310.9
(-2)
P 		420.8
(0.4)
P 		535.3
(3)
P 		268
B 509.7
(3)
P 		365.6
(0.1)
P 		212.2
(-3)
P 		372.6
(0.2)
P 		323.2
(-0.8)
P 		501.3
(2.8)
P 		298
C 538.2
(3)
P 		256.3
(-3)
P 		343.1
(-1.2)
P 		337.8
(-1.3)
P 		425.1
(0.6)
P 		530.4
(2.8)
P 		282
avr 505.9
(2.6) 		336.7
(-1.5) 		274.2
(-3) 		340.4
(-1.4) 		389.7
(-0.2) 		522.3
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 143.4
(3)
P 		63.6
(-3)
P 		78.1
(-1.9)
P 		72.5
(-2.3)
P 		80
B 110.2
(3)
P 		77.8
(-0.1)
P 		47.6
(-3)
P 		106.8
(2.7)
P 		63
C 129.4
(2.8)
P 		101.7
(-0.9)
P 		131
(3)
P 		85.7
(-3)
P 		45
avr 127.7
(3) 		81
(-3) 		85.6
(-2.4) 		88.3
(-2.1) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 86.6
(-0.9)
P 		138.1
(3)
P 		58.2
(-3)
P 		78.8
(-1.5)
P 		127
(2.2)
P 		130.3
(2.4)
P 		80
B 177.3
(2.6)
P 		121.7
(0.1)
P 		51.5
(-3)
P 		98.7
(-0.9)
P 		131.3
(0.5)
P 		186.9
(3)
P 		135
C 199.5
(3)
P 		78.2
(-2.5)
P 		87.3
(-2.1)
P 		67.9
(-3)
P 		137.6
(0.2)
P 		177.5
(2)
P 		132
avr 154.5
(2.4) 		112.7
(-0.2) 		65.7
(-3) 		81.8
(-2) 		132
(1) 		164.9
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186244_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11328
Sequence Type Exemplar sequence
Representative Public ID R01B10.5 NCBI
Target Description R01B10.5 /REP_DB=WormBase Gene ID /WP=CE26750 /TR=O61976 /GB=AAC17769.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072167 NCBI Caenorhabditis elegans R01B10.5 (R01B10.5) mRNA, complete cds. 11/11 None
R01B10.5.1 ENSEMBL cdna:known chromosome:CEL140:V:6050490:6053853:-1 gene:R01B10.5 11/11 None
R01B10.5.2 ENSEMBL cdna:known chromosome:CEL140:V:6050490:6053855:-1 gene:R01B10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013418 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013433 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6050732-6055794(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01B10.5
Entrez Gene 178993 Entrez gene
SwissProt Q9BMT9 EMBL-EBI
WormBase CE26750 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602184_AT similar to CG2126-PA cfa
CANINE_2:CFA.17104.1.S1_AT similar to CG2126-PA cfa
CANINE_2:CFAAFFX.23866.1.S1_S_AT similar to CG2126-PA cfa
DROSOPHILA_2:1639678_AT dm
DROSGENOME1:150956_AT dm
CHICKEN:GGA.1705.1.S1_AT similar to chromosome 14 open reading frame 100 gga
HG-U133_PLUS_2:223215_S_AT chromosome 14 open reading frame 100 hs
HG-U133B:223215_S_AT chromosome 14 open reading frame 100 hs
HG-U133_PLUS_2:223547_AT chromosome 14 open reading frame 100 hs
HG-U133B:223547_AT chromosome 14 open reading frame 100 hs
HU35KSUBA:RC_AA447189_AT chromosome 14 open reading frame 100 hs
HU35KSUBD:RC_T26419_F_AT chromosome 14 open reading frame 100 hs
U133_X3P:G7106815_3P_A_AT chromosome 14 open reading frame 100 hs
U133_X3P:HS.170219.0.S2_3P_AT chromosome 14 open reading frame 100 hs
HG-U95C:65712_AT chromosome 14 open reading frame 100 hs
HU35KSUBD:RC_R48950_AT Chromosome 14 open reading frame 100 hs
MOUSE430_2:1441959_S_AT RIKEN cDNA 1200003C05 gene mm
MOE430B:1441959_S_AT RIKEN cDNA 1200003C05 gene mm
MG-U74BV2:110324_AT RIKEN cDNA 1200003C05 gene mm
MG-U74AV2:160302_AT RIKEN cDNA 1200003C05 gene mm
MG-U74CV2:168157_AT RIKEN cDNA 1200003C05 gene mm
MOE430A:1451238_AT RIKEN cDNA 1200003C05 gene mm
MOUSE430A_2:1451238_AT RIKEN cDNA 1200003C05 gene mm
MOUSE430_2:1451238_AT RIKEN cDNA 1200003C05 gene mm
MOE430A:1424106_AT RIKEN cDNA 1200003C05 gene mm
MOUSE430A_2:1424106_AT RIKEN cDNA 1200003C05 gene mm
MOUSE430_2:1424106_AT RIKEN cDNA 1200003C05 gene mm
MG-U74BV2:162788_AT RIKEN cDNA 1200003C05 gene (1200003C05Rik), mRNA mm
MU19KSUBA:TC23453_AT RIKEN cDNA 1200003C05 gene (1200003C05Rik), mRNA mm
MU19KSUBA:TC23453_G_AT RIKEN cDNA 1200003C05 gene (1200003C05Rik), mRNA mm
MU19KSUBA:TC24960_AT RIKEN cDNA 1200003C05 gene (1200003C05Rik), mRNA mm
MU19KSUBC:TC39432_AT RIKEN cDNA 1200003C05 gene (1200003C05Rik), mRNA mm
RG-U34C:RC_AI230073_AT similar to RIKEN cDNA 1200003C05 (predicted) rn
RAE230A:1399049_AT similar to RIKEN cDNA 1200003C05 (predicted) rn
RAT230_2:1399049_AT similar to RIKEN cDNA 1200003C05 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC17769 Hypothetical protein R01B10.5 [Caenorhabditis elegans] ref|NP_504568.1| R01B10.5 [Caenorhabditis elegans] gb|AAG50232.1| seven transmembrane protein [Caenorhabditis elegans] 0.0
blast CAE64521 Hypothetical protein CBG09259 [Caenorhabditis briggsae] 1.0E-149
blast XP_547838 PREDICTED: similar to CG2126-PA [Canis familiaris] 1.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR008485 EMBL-EBI Protein of unknown function DUF766 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504568.1 7 74-96,109-131,167-189,202-224,228-250,270-289,294-316
R01B10.5.1 7 74-96,109-131,167-189,202-224,228-250,270-289,294-316
R01B10.5.2 7 74-96,109-131,167-189,202-224,228-250,270-289,294-316
Sequence
Target Sequence 
>C. ELEGANS:186244_S_AT
gttcaacactctactgcgttttgctctacaaaacatacaacggaaaaccattctacgcag
caatcgtctcggttcctatcctggctgtgattcatgcagttctctctggcgttgtcttct
acacatttccgtacattctcctcatcgggtcactttgggcaatgtgcttccatttggctt
tagaaggaaaacgaccattgaaggaaatgattgttcgtattgccacttctccaacacatt
tgatattcttatcgataacgatgttgatgctctcattcggtgttattgctatcattgctc
cacttttttccagtgaaacatcatcatcattcaagaaaatgcactttcttggttcagtta
gaaatgtagctgttttaaatttccttctctctctctgtttttccttattcacattttccg
gtctttcttctactttcctctccatcatttctccccgtttgtgctcgttttttcgtgatc
acaatatatattgccatctcccaaaacctgtcacccgaatttccaaagaatccctattcc
caaatctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAACACTCTACTGCGTTTTGCT 534 445 1433 Antisense
TCCTATCCTGGCTGTGATTCATGCA 374 591 1506 Antisense
GTCTTCTACACATTTCCGTACATTC 675 467 1546 Antisense
GGGTCACTTTGGGCAATGTGCTTCC 562 497 1579 Antisense
ATGATTGTTCGTATTGCCACTTCTC 643 45 1639 Antisense
GCTCTCATTCGGTGTTATTGCTATC 181 299 1701 Antisense
GTAGCTGTTTTAAATTTCCTTCTCT 618 457 1798 Antisense
CTCTCTGTTTTTCCTTATTCACATT 684 229 1823 Antisense
GTTTGTGCTCGTTTTTTCGTGATCA 141 453 1889 Antisense
TATATATTGCCATCTCCCAAAACCT 681 659 1917 Antisense
AAGAATCCCTATTCCCAAATCTCTT 142 153 1958 Antisense
Sequence Source Affymetrix Proprietary Database