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[186243_at]

Description F49F1.10 /REP_DB=WormBase Gene ID /WP=CE17093 /TR=Q9GZD9 /GB=AAF99966.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4.4
(-2.7)
A 		31.3
(1.3)
A 		42.8
(3)
A 		2.4
(-3)
A 		40
B 1.3
(-3)
A 		23.9
(3)
A 		21.2
(2.3)
A 		2.6
(-2.7)
A 		23
C 22
(-0.6)
A 		46.5
(3)
A 		34.4
(1.2)
A 		5.7
(-3)
A 		41
avr 9.2
(-1.9) 		33.9
(3) 		32.8
(2.8) 		3.6
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 68.7
(3)
A 		15.2
(-2)
A 		40.3
(0.3)
A 		32.8
(-0.4)
A 		11.4
(-2.4)
A 		4.9
(-3)
A 		64
B 38.5
(1.8)
A 		28.9
(-0.2)
A 		15.9
(-3)
A 		21.4
(-1.8)
A 		43.9
(3)
A 		18.5
(-2.4)
A 		28
C 11.1
(-3)
A 		17.3
(-2)
A 		18.6
(-1.8)
A 		47.8
(3)
A 		18.7
(-1.8)
A 		17.5
(-2)
A 		37
avr 39.4
(3) 		20.5
(-1.4) 		24.9
(-0.4) 		34
(1.7) 		24.7
(-0.4) 		13.6
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.6
(-2.3)
A 		6.8
(0.6)
A 		11.2
(3)
A 		0.3
(-3)
A 		11
B 0.4
(-3)
A 		5.9
(3)
A 		4.9
(1.9)
A 		0.6
(-2.8)
A 		6
C 7.3
(0)
A 		13.4
(3)
A 		12
(2.3)
A 		1
(-3)
A 		12
avr 3.1
(-1.3) 		8.7
(2.5) 		9.4
(3) 		0.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 12.7
(3)
A 		5.4
(-0.8)
A 		8.8
(1)
A 		8.3
(0.7)
A 		3.4
(-1.9)
A 		1.2
(-3)
A 		12
B 13.4
(1.1)
A 		9.6
(-0.5)
A 		3.9
(-3)
A 		5.7
(-2.2)
A 		17.8
(3)
A 		6.9
(-1.7)
A 		14
C 4.1
(-3)
A 		5.3
(-1.7)
A 		4.7
(-2.3)
A 		9.6
(3)
A 		6.1
(-0.8)
A 		5.9
(-1)
A 		6
avr 10.1
(3) 		6.8
(-0.7) 		5.8
(-1.8) 		7.9
(0.6) 		9.1
(1.9) 		4.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10503
Sequence Type Exemplar sequence
Representative Public ID F49F1.10 NCBI
Target Description F49F1.10 /REP_DB=WormBase Gene ID /WP=CE17093 /TR=Q9GZD9 /GB=AAF99966.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068090 NCBI Caenorhabditis elegans F49F1.10 (F49F1.10) mRNA, complete cds. 11/11 None
SNAP00000034593 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4138401:4139115:-1 11/11 None
GENEFINDER00000034599 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4135546:4143012:-1 11/11 None
F49F1.10 ENSEMBL cdna:known chromosome:CEL140:IV:4138401:4139115:-1 gene:F49F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4138406-4139121(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49F1.10
Entrez Gene 186066 Entrez gene
SwissProt Q9GZD9 EMBL-EBI
WormBase CE17093 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99966 Hypothetical protein F49F1.10 [Caenorhabditis elegans] ref|NP_500491.1| F49F1.10 [Caenorhabditis elegans] 7.0E-92
blast AAF99966 Hypothetical protein F49F1.10 [Caenorhabditis elegans] ref|NP_500491.1| F49F1.10 [Caenorhabditis elegans] 8.0E-88
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 5.0E-81
blast AAF99965 Hypothetical protein F49F1.9 [Caenorhabditis elegans] ref|NP_500490.1| F49F1.9 [Caenorhabditis elegans] 9.0E-81
blast CAB04390 Hypothetical protein F46A8.4 [Caenorhabditis elegans] ref|NP_492884.1| F46A8.4 [Caenorhabditis elegans] 3.0E-70
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 4.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034599 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:186243_AT
tccacggccttcaaaacctgtaacaacacctaagccacgagacgactggataacgatcaa
tgggccgtttacaaccactctaccaattcctggaggatattgggatactgggaagatcat
gcgtatttatggtatacctggaagtggaagatggaccatcaacctggcaaaatcaaaagt
ttgggtgtttcactttgcggtagagcctagcaagggacttgtagccagaacccgacattt
gaatggaaagtggcaagtcggtgaaacatatggtggaaacccatttcgagctaatgccgc
ctttaatgttactatggtcaatcagccaacgcatatcgagattcatgtcaatggtgcatt
ctttgtaaatttcaatcatcgagtttccaatccatccagagactatctatcgatttccaa
ttcgtttctatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACGGCCTTCAAAACCTGTAACA 375 589 174 Antisense
GTAACAACACCTAAGCCACGAGACG 662 459 193 Antisense
GCCACGAGACGACTGGATAACGATC 548 277 207 Antisense
TCAATGGGCCGTTTACAACCACTCT 20 633 230 Antisense
GGTGTTTCACTTTGCGGTAGAGCCT 129 501 357 Antisense
GGTAGAGCCTAGCAAGGGACTTGTA 504 505 372 Antisense
GGAAAGTGGCAAGTCGGTGAAACAT 659 525 418 Antisense
GCTAATGCCGCCTTTAATGTTACTA 441 301 463 Antisense
GGTGCATTCTTTGTAAATTTCAATC 125 501 526 Antisense
ATTTCAATCATCGAGTTTCCAATCC 19 17 542 Antisense
TCGATTTCCAATTCGTTTCTATCTC 206 603 583 Antisense
Sequence Source Affymetrix Proprietary Database