[Home] | [Total List]

[186242_at]

Description T24A6.10 /REP_DB=WormBase Gene ID /WP=CE14142 /TR=O61941 /GB=AAC17797.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 02      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 45.1
(-1.7)
A 		5.5
(-3)
A 		28.9
(-2.2)
A 		192
(3)
P 		187
B 43.3
(-2.9)
A 		40.1
(-3)
A 		51.3
(-2.5)
A 		169.3
(3)
P 		129
C 37
(-2.8)
A 		44.5
(-2.5)
A 		32.2
(-3)
A 		171.6
(3)
P 		139
avr 41.8
(-2.5) 		30
(-3) 		37.5
(-2.7) 		177.6
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 30.8
(-3)
A 		38.3
(-2.7)
A 		60.7
(-1.6)
P 		41.6
(-2.5)
A 		68.4
(-1.3)
A 		162.4
(3)
P 		132
B 22.3
(-2.8)
A 		16.8
(-3)
A 		29.5
(-2.5)
A 		44.6
(-1.8)
P 		39.8
(-2)
A 		160.8
(3)
P 		144
C 36.1
(-3)
A 		40.8
(-2.8)
A 		48.3
(-2.6)
A 		106.4
(-0.6)
P 		59.4
(-2.2)
A 		213.9
(3)
P 		178
avr 29.7
(-3) 		32
(-2.9) 		46.2
(-2.3) 		64.2
(-1.6) 		55.9
(-1.9) 		179
(3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 16.4
(0.4)
A 		1.2
(-3)
A 		7.6
(-1.6)
A 		28.1
(3)
P 		27
B 13.8
(-2.1)
A 		9.9
(-3)
A 		11.9
(-2.5)
A 		36.1
(3)
P 		26
C 12.2
(-2.7)
A 		12.8
(-2.5)
A 		11.2
(-3)
A 		28.9
(3)
P 		18
avr 14.1
(-1.4) 		8
(-3) 		10.2
(-2.4) 		31
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 5.7
(-3)
A 		13.6
(-1.6)
A 		13.2
(-1.7)
P 		10.6
(-2.1)
A 		20.6
(-0.4)
A 		39.5
(3)
P 		34
B 7.8
(-2.8)
A 		5.6
(-3)
A 		7.2
(-2.8)
A 		11.8
(-2.3)
P 		16.2
(-1.8)
A 		59.9
(3)
P 		54
C 13.4
(-2.9)
A 		12.5
(-3)
A 		12.3
(-3)
A 		21.4
(-2.1)
P 		19.2
(-2.3)
A 		71.6
(3)
P 		59
avr 9
(-3) 		10.6
(-2.8) 		10.9
(-2.8) 		14.6
(-2.3) 		18.7
(-1.8) 		57
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14805
Sequence Type Exemplar sequence
Representative Public ID T24A6.10 NCBI
Target Description T24A6.10 /REP_DB=WormBase Gene ID /WP=CE14142 /TR=O61941 /GB=AAC17797.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071588 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-67) (srbc-67) mRNA, complete cds. 11/11 None
T24A6.10 ENSEMBL cdna:known chromosome:CEL140:V:3538755:3540155:-1 gene:T24A6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027439 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3538754-3540155(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-67
Ensembl T24A6.10
Entrez Gene 188827 Entrez gene
SwissProt O61941 EMBL-EBI
WormBase CE14142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17797 Serpentine receptor, class bc (class b-like) protein 67 [Caenorhabditis elegans] ref|NP_503989.1| Serpentine Receptor, class BC (class B-like) family member (srbc-67) [Caenorhabditis elegans] 1.0E-148
blast AAC17800 Serpentine receptor, class bc (class b-like) protein 68 [Caenorhabditis elegans] ref|NP_503992.1| Serpentine Receptor, class BC (class B-like) family member (srbc-68) [Caenorhabditis elegans] 9.0E-81
blast NP_500516 Serpentine Receptor, class BC (class B-like) family member (srbc-70) [Caenorhabditis elegans] gb|AAA83495.1| Hypothetical protein F30B5.6 [Caenorhabditis elegans] 3.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.3E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503989.1 7 10-32,53-72,82-104,125-144,178-200,221-238,242-264
T24A6.10 7 10-32,53-72,82-104,125-144,178-200,221-238,242-264
Sequence
Target Sequence 
>C. ELEGANS:186242_AT
ttgctctattttcttctcaattttacaacccaaatcgtcgaaagcttccattgtctgtca
ttttccttatcatatccagctcgatagcttttgatcattttataatgttcggatattgtg
agaatgtcatagatactccaatcgactgcgatagtgccagatgttgttataatgcgtgtt
atgctcacttttggatttcacgggaacaagttatgttctgttgtatagttatgatgacag
ttttgttatcattgaagctagtagtttgcacatacttcacacataatcaacacgctcgaa
ttttgtcaagagcaactcaaatagcaatgattgactccactactcttattttattcaacc
ttattccaattctaactcatgtttggtttgcgtcttcagattatcaaacatacgcgtcta
ttactactctatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCTATTTTCTTCTCAATTTTA 376 701 335 Antisense
AAATCGTCGAAAGCTTCCATTGTCT 254 119 366 Antisense
TCCATTGTCTGTCATTTTCCTTATC 591 591 381 Antisense
ATAGATACTCCAATCGACTGCGATA 108 23 463 Antisense
AATGCGTGTTATGCTCACTTTTGGA 39 167 505 Antisense
GTAGTTTGCACATACTTCACACATA 573 455 595 Antisense
ACTTCACACATAATCAACACGCTCG 476 103 608 Antisense
GCAATGATTGACTCCACTACTCTTA 545 321 658 Antisense
TCAACCTTATTCCAATTCTAACTCA 689 631 689 Antisense
CTCATGTTTGGTTTGCGTCTTCAGA 567 227 710 Antisense
ATACGCGTCTATTACTACTCTATCC 610 23 744 Antisense
Sequence Source Affymetrix Proprietary Database