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[186241_s_at]

Description F49C12.14 /REP_DB=WormBase Gene ID /WP=CE03374 /TR=Q20590 /GB=CAA92516.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 43      6grp_total > 61      4grp_total > 58      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1069
1 2 3 4 range
A 750.5
(0.2)
P 		642.9
(-0.5)
P 		1206.2
(3)
P 		240.9
(-3)
P 		965
B 586.9
(-1.1)
P 		1210.4
(2.4)
P 		1309.8
(3)
P 		252.1
(-3)
P 		1058
C 781
(0.3)
P 		1123
(2.6)
P 		1183.8
(3)
P 		280.9
(-3)
P 		903
avr 706.1
(-0.2) 		992.1
(1.5) 		1233.3
(3) 		258
(-3) 		975

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1125
1 2 3 4 5 6 range
A 465.1
(-3)
P 		848.7
(-0.9)
P 		1537.4
(3)
P 		1083.6
(0.5)
P 		818.4
(-1)
P 		621.9
(-2.1)
P 		1072
B 728.9
(-3)
P 		954.6
(-0.9)
P 		1384.3
(3)
P 		1313
(2.3)
P 		939.5
(-1.1)
P 		766.2
(-2.7)
P 		655
C 412.4
(-3)
P 		1104.4
(1.1)
P 		1041.7
(0.7)
P 		1430.6
(3)
P 		748.5
(-1)
P 		971.4
(0.3)
P 		1018
avr 535.5
(-3) 		969.2
(0.3) 		1321.1
(3) 		1275.7
(2.7) 		835.5
(-0.7) 		786.5
(-1.1) 		786
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 273.2
(2.1)
P 		139.6
(-0.8)
P 		315.3
(3)
P 		35.3
(-3)
P 		280
B 187.2
(0.2)
P 		298.9
(2.9)
P 		303.5
(3)
P 		53.7
(-3)
P 		250
C 258.5
(0.5)
P 		322.9
(1.5)
P 		412.6
(3)
P 		47.4
(-3)
P 		365
avr 239.6
(0.9) 		253.8
(1.2) 		343.8
(3) 		45.5
(-3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 85.7
(-3)
P 		301.8
(2.2)
P 		334.8
(3)
P 		274.8
(1.6)
P 		246.9
(0.9)
P 		151.4
(-1.4)
P 		249
B 253.6
(-3)
P 		317.8
(0)
P 		336.2
(0.9)
P 		347.8
(1.4)
P 		381.7
(3)
P 		285.7
(-1.5)
P 		128
C 152.9
(-3)
P 		337
(3)
P 		265.1
(0.7)
P 		287.7
(1.4)
P 		242.2
(-0.1)
P 		325.2
(2.6)
P 		184
avr 164.1
(-3) 		318.9
(3) 		312
(2.7) 		303.4
(2.4) 		290.3
(1.9) 		254.1
(0.5) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186241_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9614
Sequence Type Exemplar sequence
Representative Public ID F49C12.14 NCBI
Target Description F49C12.14 /REP_DB=WormBase Gene ID /WP=CE03374 /TR=Q20590 /GB=CAA92516.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069236 NCBI Caenorhabditis elegans F49C12.14 (F49C12.14) mRNA, complete cds. 11/11 None
GENEFINDER00000032712 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9322503:9324040:-1 11/11 None
F49C12.14 ENSEMBL cdna:known chromosome:CEL140:IV:9322485:9324085:-1 gene:F49C12.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032702 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9322508-9324058(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.14
Entrez Gene 177758 Entrez gene
SwissProt Q20590 EMBL-EBI
WormBase CE03374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92516 Hypothetical protein F49C12.14 [Caenorhabditis elegans] ref|NP_501637.1| F49C12.14 [Caenorhabditis elegans] 1.0E-133
blast CAA92516 Hypothetical protein F49C12.14 [Caenorhabditis elegans] ref|NP_501637.1| F49C12.14 [Caenorhabditis elegans] 1.0E-131
blast CAE74052 Hypothetical protein CBG21704 [Caenorhabditis briggsae] 2.0E-86
blast AAK84603 Hypothetical protein Y34B4A.9 [Caenorhabditis elegans] ref|NP_508891.1| Y34B4A.9 [Caenorhabditis elegans] 9.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 2.3E-66
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 2.3E-66
Sequence
Target Sequence 
>C. ELEGANS:186241_S_AT
attggcaaacgcctcgtgtgacactacaaagttcgttgcctgccaggacaaatttgcaga
taaattgggaatcgatagagtttttaattggttgaaccctcttggtctcacacttcaaat
tcaagatatctacataaatggtggaactggtggtgttagaggattgaatgctgtttgcaa
ttcatataattcaatggttcagtgtcttgccgatgcatcaacaacgacttttgaatgttt
tgacataggatatctcttgaatcattcaaatgctccaaaccaagcatattcatatggttt
cttgatgagtatgctacagtatcaatgtggagctggtttttatctggcttctgacaattg
gtcgtgtatgcagcgaatctacaatggaaagaatgcaacaatgtacggatgtattactga
tttcgtgctcaatgctcaagaagatccgaagaagggttgcaactatgttcaaactggaat
ggattgtttttcgaaagcatcaatactccaaggatgtccagatgagctgaaatattatgg
atgcgagtctttccgtcagtattctcttccacaatttgcccgttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGCAAACGCCTCGTGTGACACT 608 3 63 Antisense
GACACTACAAAGTTCGTTGCCTGCC 498 367 82 Antisense
TAATTGGTTGAACCCTCTTGGTCTC 464 633 147 Antisense
CCTCTTGGTCTCACACTTCAAATTC 620 267 160 Antisense
CAATGGTTCAGTGTCTTGCCGATGC 450 183 254 Antisense
TGCCGATGCATCAACAACGACTTTT 562 585 270 Antisense
GGCTTCTGACAATTGGTCGTGTATG 428 537 408 Antisense
TTACTGATTTCGTGCTCAATGCTCA 556 681 476 Antisense
TATGGATGCGAGTCTTTCCGTCAGT 398 653 598 Antisense
CGAGTCTTTCCGTCAGTATTCTCTT 704 249 606 Antisense
CTCTTCCACAATTTGCCCGTTGTGA 646 227 626 Antisense
Sequence Source Affymetrix Proprietary Database