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[186240_at]

Description T15B7.13 /REP_DB=WormBase Gene ID /WP=CE13670 /TR=O17034 /GB=AAB69966.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 28.3
(-1.7)
P 		18.7
(-3)
A 		23.5
(-2.3)
A 		62
(3)
A 		43
B 39.1
(1.6)
A 		46.7
(2.6)
A 		4.5
(-3)
A 		49.4
(3)
A 		45
C 22.2
(-0.7)
A 		37.3
(2.8)
A 		11.9
(-3)
A 		38.2
(3)
A 		26
avr 29.9
(-0.3) 		34.2
(0.4) 		13.3
(-3) 		49.9
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 44.6
(3)
A 		15.7
(-1.2)
A 		24.3
(0.1)
A 		32.8
(1.3)
A 		34.5
(1.5)
P 		3.1
(-3)
A 		42
B 41.8
(3)
A 		4.3
(-2.7)
A 		36.7
(2.2)
M 		24.8
(0.4)
A 		34.9
(1.9)
P 		2.6
(-3)
A 		39
C 19.4
(-0.1)
P 		14.9
(-0.9)
A 		23.1
(0.5)
A 		36.9
(3)
A 		9.3
(-1.9)
A 		3.4
(-3)
A 		34
avr 35.3
(3) 		11.6
(-1.4) 		28
(1.6) 		31.5
(2.3) 		26.2
(1.3) 		3
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.3
(3)
P 		4.1
(-3)
A 		6.1
(-1.1)
A 		9.1
(1.8)
A 		6
B 12.5
(3)
A 		11.5
(2.5)
A 		1
(-3)
A 		10.5
(2)
A 		12
C 7.3
(-0.1)
A 		10.7
(3)
A 		4.2
(-3)
A 		6.4
(-1)
A 		7
avr 10
(3) 		8.8
(1.8) 		3.8
(-3) 		8.7
(1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.2
(1.6)
A 		5.6
(0)
A 		5.3
(-0.2)
A 		8.3
(1.7)
A 		10.4
(3)
P 		0.8
(-3)
A 		10
B 14.5
(3)
A 		1.4
(-2.8)
A 		8.9
(0.5)
M 		6.6
(-0.5)
A 		14.2
(2.9)
P 		1
(-3)
A 		14
C 7.2
(2.8)
P 		4.5
(0.2)
A 		5.9
(1.6)
A 		7.4
(3)
A 		3
(-1.2)
A 		1.1
(-3)
A 		6
avr 10
(3) 		3.8
(-1.1) 		6.7
(0.8) 		7.4
(1.3) 		9.2
(2.5) 		1
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12346
Sequence Type Exemplar sequence
Representative Public ID T15B7.13 NCBI
Target Description T15B7.13 /REP_DB=WormBase Gene ID /WP=CE13670 /TR=O17034 /GB=AAB69966.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072333 NCBI Caenorhabditis elegans T15B7.13 (T15B7.13) mRNA, complete cds. 11/11 None
T15B7.13 ENSEMBL cdna:known chromosome:CEL140:V:6829740:6831480:-1 gene:T15B7.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035406 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6829740-6831481(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.13
Entrez Gene 188523 Entrez gene
SwissProt O17034 EMBL-EBI
WormBase CE13670 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69966 Hypothetical protein T15B7.13 [Caenorhabditis elegans] ref|NP_504734.1| T15B7.13 [Caenorhabditis elegans] 1.0E-177
blast AAL11103 Hypothetical protein ZC404.13 [Caenorhabditis elegans] ref|NP_504723.1| ZC404.13 [Caenorhabditis elegans] 4.0E-27
blast AAA97969 Hypothetical protein ZC404.11 [Caenorhabditis elegans] ref|NP_504725.1| ZC404.11 [Caenorhabditis elegans] 3.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504734.1 7 72-94,101-123,138-160,188-206,221-243,269-291,301-323
T15B7.13 7 72-94,101-123,138-160,188-206,221-243,269-291,301-323
Sequence
Target Sequence 
>C. ELEGANS:186240_AT
tcggatgtctttgctgttttatgggattctatttgacgttgagaataattggttacagac
ttcaacgaaattatttcagattgttccactacttctgcttttcatatttttcttgttaat
tctgtgcaaactgaactctttcaaagctcatagaaagaaaacaatgggcaaatcaagctc
atcaggaatcgaaaactcctcgcggcttttgcaagtagttttgataatgttttttctagt
caaaatcccgagtgcagcggtaactattttcagtgcagtatatatgattgactattatat
gtttgtgaaaaagtggacttttcaatttatcgaaattttacttactttcaacgcatcaac
gtcttttatcatctattgtataatgtcttcgcagttccgtgaaatttttgttcggttatt
tgtccctgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGATGTCTTTGCTGTTTTATGGG 358 607 600 Antisense
TTCTGTGCAAACTGAACTCTTTCAA 429 693 719 Antisense
GGGCAAATCAAGCTCATCAGGAATC 101 493 765 Antisense
CAGGAATCGAAAACTCCTCGCGGCT 506 207 782 Antisense
TCCTCGCGGCTTTTGCAAGTAGTTT 631 593 796 Antisense
TCTAGTCAAAATCCCGAGTGCAGCG 630 609 834 Antisense
GAGTGCAGCGGTAACTATTTTCAGT 626 399 849 Antisense
TTTTACTTACTTTCAACGCATCAAC 373 673 935 Antisense
ACGCATCAACGTCTTTTATCATCTA 20 93 950 Antisense
GTATAATGTCTTCGCAGTTCCGTGA 71 453 977 Antisense
TTTGTTCGGTTATTTGTCCCTGAGA 461 665 1006 Antisense
Sequence Source Affymetrix Proprietary Database