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[186239_at]

Description T03F1.10 /REP_DB=WormBase Gene ID /WP=CE13114 /TR=P91429 /GB=AAB42238.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      6grp_total > 08      4grp_total > 61      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 510.1
(3)
P 		402.4
(1.5)
P 		457.1
(2.3)
P 		73.2
(-3)
A 		437
B 406
(3)
P 		380
(2.5)
P 		355.5
(2)
P 		108.1
(-3)
A 		298
C 471.6
(2.7)
P 		340
(0.6)
P 		486.8
(3)
P 		124.9
(-3)
A 		362
avr 462.6
(3) 		374.1
(1.5) 		433.1
(2.5) 		102.1
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 375.7
(3)
P 		211.4
(-1)
P 		259.9
(0.2)
P 		264.9
(0.3)
P 		140.7
(-2.8)
P 		130.6
(-3)
P 		245
B 316.6
(3)
P 		253.7
(0.9)
P 		251.1
(0.8)
P 		281.3
(1.8)
P 		175.4
(-1.7)
P 		138
(-3)
P 		179
C 324.5
(3)
P 		211
(-0.8)
P 		300.6
(2.2)
P 		277.4
(1.4)
A 		166.1
(-2.2)
P 		143.3
(-3)
P 		181
avr 338.9
(3) 		225.4
(-0.4) 		270.5
(1) 		274.5
(1.1) 		160.7
(-2.3) 		137.3
(-3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 185.7
(3)
P 		87.4
(-0.4)
P 		119.5
(0.7)
P 		10.7
(-3)
A 		175
B 129.5
(3)
P 		93.9
(1)
P 		82.4
(0.3)
P 		23
(-3)
A 		107
C 156.1
(2.5)
P 		97.7
(0.1)
P 		169.7
(3)
P 		21.1
(-3)
A 		149
avr 157.1
(3) 		93
(0.2) 		123.9
(1.6) 		18.3
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 69.3
(2.2)
P 		75.2
(3)
P 		56.6
(0.4)
P 		67.2
(1.9)
P 		42.4
(-1.5)
P 		31.8
(-3)
P 		43
B 110.2
(3)
P 		84.4
(0.4)
P 		61
(-2)
P 		74.5
(-0.6)
P 		71.3
(-1)
P 		51.5
(-3)
P 		59
C 120.3
(3)
P 		64.4
(-1.6)
P 		76.5
(-0.6)
P 		55.8
(-2.4)
A 		53.7
(-2.5)
P 		48
(-3)
P 		72
avr 99.9
(3) 		74.7
(0.3) 		64.7
(-0.8) 		65.8
(-0.6) 		55.8
(-1.7) 		43.8
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.93
Sequence Type Exemplar sequence
Representative Public ID T03F1.10 NCBI
Target Description T03F1.10 /REP_DB=WormBase Gene ID /WP=CE13114 /TR=P91429 /GB=AAB42238.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058846 NCBI Caenorhabditis elegans C-type LECtin family member (clec-53) (clec-53) mRNA, complete cds. 11/11 None
SNAP00000013120 ENSEMBL cdna:SNAP chromosome:CEL140:I:3871505:3873398:-1 11/11 None
GENEFINDER00000013132 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3871505:3873398:-1 11/11 None
T03F1.10 ENSEMBL cdna:known chromosome:CEL140:I:3871476:3873342:-1 gene:T03F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3871504-3873342(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-53
Ensembl T03F1.10
Entrez Gene 171967 Entrez gene
SwissProt P91429 EMBL-EBI
WormBase CE38630 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.286.1.S1_AT similar to mannose receptor, C type 2; endocytic receptor (macrophage mannose receptor family); urokinase plasminogen activator receptor-associated protein gga
CHICKEN:GGAAFFX.286.2.S1_S_AT similar to mannose receptor, C type 2; endocytic receptor (macrophage mannose receptor family); urokinase plasminogen activator receptor-associated protein gga
HG-U133A:209280_AT mannose receptor, C type 2 hs
HG-U133A_2:209280_AT mannose receptor, C type 2 hs
HG-U133_PLUS_2:209280_AT mannose receptor, C type 2 hs
HU35KSUBA:RC_AA600363_AT mannose receptor, C type 2 hs
HU35KSUBA:U58856_AT mannose receptor, C type 2 hs
U133_X3P:G2209262_3P_S_AT mannose receptor, C type 2 hs
U133_X3P:4902565C_3P_AT mannose receptor, C type 2 hs
HG-U133A_2:37408_AT mannose receptor, C type 2 hs
HG-FOCUS:37408_AT mannose receptor, C type 2 hs
HG-U133_PLUS_2:37408_AT mannose receptor, C type 2 hs
HG-U133A:37408_AT mannose receptor, C type 2 hs
HG-U95AV2:37408_AT mannose receptor, C type 2 hs
HG-U95C:63996_AT mannose receptor, C type 2 hs
HU35KSUBC:RC_W44924_AT Mannose receptor, C type 2 hs
U133_X3P:HS.55780.0.A1_3P_AT Mannose receptor, C type 2 hs
HG-U133_PLUS_2:244788_AT Mannose receptor, C type 2 hs
HG-U133B:244788_AT Mannose receptor, C type 2 hs
HG-U95C:53311_AT Mannose receptor, C type 2 hs
HG-U95C:60321_AT Mannose receptor, C type 2 hs
MU11KSUBB:MSA.2964.0_S_AT mannose receptor, C type 2 mm
MG-U74AV2:100759_AT mannose receptor, C type 2 mm
MG-U74BV2:114212_AT mannose receptor, C type 2 mm
MOE430A:1421044_AT mannose receptor, C type 2 mm
MOUSE430A_2:1421044_AT mannose receptor, C type 2 mm
MOUSE430_2:1421044_AT mannose receptor, C type 2 mm
MOE430A:1421045_AT mannose receptor, C type 2 mm
MOUSE430A_2:1421045_AT mannose receptor, C type 2 mm
MOUSE430_2:1421045_AT mannose receptor, C type 2 mm
MOE430B:1446466_AT Mannose receptor, C type 2 (Mrc2), mRNA mm
MOUSE430_2:1446466_AT Mannose receptor, C type 2 (Mrc2), mRNA mm
MU19KSUBC:TC39904_AT Mannose receptor, C type 2 (Mrc2), mRNA mm
Protein Similarities
Method ID Description E-Value
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 1.0E-178
blast T29200 hypothetical protein T03F1.10 - Caenorhabditis elegans 1.0E-163
blast T29200 hypothetical protein T03F1.10 - Caenorhabditis elegans 1.0E-160
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 1.0E-160
blast AAB00670 C-type lectin protein 52 [Caenorhabditis elegans] ref|NP_501371.1| C-type LECtin family member (clec-52) [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 9.8E-16
Pfam IPR001304 EMBL-EBI C-type lectin 7.5E-20
Pfam IPR001304 EMBL-EBI C-type lectin 9.8E-16
Pfam IPR001304 EMBL-EBI C-type lectin 7.5E-20
Sequence
Target Sequence 
>C. ELEGANS:186239_AT
aaagttgggcagccaactccacctggatcaactgcctgcatgcaacttgagactggaact
gccaaatggcaaactgcaaattgtacgaataaattaccatttatatgttctgccgctgca
actgtagttccaacttgtcctactataacaattccaagtcattgtccatctggttacact
tggtttgagactactgatttctgctacaagaccactgtccaattcaccaactttaacgat
gctcgcagcgcttgccaagctgatggaggagatttggcctcaattcattctattgcggag
aacgcgttcctagttggtctctcaaaagccggaatcacgaacaaagataaggactggaat
gatgatgtttggattggattggtctatcaaaactcaaaatggcaatggactgatggatca
gtagtcaattatgttaactggggagatggagagccaaataatatgaataaggaatggtgg
accgctctagtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTGGGCAGCCAACTCCACCTG 268 123 262 Antisense
GATCAACTGCCTGCATGCAACTTGA 666 419 287 Antisense
TATATGTTCTGCCGCTGCAACTGTA 698 659 363 Antisense
ACTGTAGTTCCAACTTGTCCTACTA 420 95 382 Antisense
GAGACTACTGATTTCTGCTACAAGA 617 393 448 Antisense
ACAAGACCACTGTCCAATTCACCAA 631 111 467 Antisense
TTCACCAACTTTAACGATGCTCGCA 198 687 484 Antisense
TGGCCTCAATTCATTCTATTGCGGA 176 545 536 Antisense
GAGAACGCGTTCCTAGTTGGTCTCT 67 393 559 Antisense
TGGTCTCTCAAAAGCCGGAATCACG 552 551 576 Antisense
AAGGAATGGTGGACCGCTCTAGTCG 548 159 730 Antisense
Sequence Source Affymetrix Proprietary Database