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[186238_s_at]

Description T02B11.6 /REP_DB=WormBase Gene ID /WP=CE13042 /TR=O16976 /GB=AAB69904.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 11      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 61.5
(1.5)
A 		18.8
(-2.5)
A 		13.3
(-3)
A 		78.1
(3)
A 		65
B 25.9
(-2.6)
A 		74.3
(-0.9)
A 		13.6
(-3)
A 		185.5
(3)
M 		172
C 26
(-2.8)
A 		26.7
(-2.8)
A 		22
(-3)
A 		155.9
(3)
A 		134
avr 37.8
(-2) 		39.9
(-1.9) 		16.3
(-3) 		139.8
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 57.4
(3)
A 		47.2
(1.7)
A 		10.6
(-3)
A 		14
(-2.6)
A 		13.5
(-2.6)
A 		29
(-0.6)
A 		47
B 90.4
(3)
A 		14.8
(-2.2)
A 		23.4
(-1.6)
A 		8
(-2.7)
A 		8.5
(-2.7)
A 		3.6
(-3)
A 		87
C 120.5
(3)
A 		12.1
(-2.8)
A 		8.2
(-3)
A 		19.5
(-2.4)
A 		19.1
(-2.4)
A 		9.3
(-2.9)
A 		112
avr 89.4
(3) 		24.7
(-2.1) 		14.1
(-3) 		13.8
(-3) 		13.7
(-3) 		14
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 22.4
(3)
A 		4.1
(-2.8)
A 		3.5
(-3)
A 		11.4
(-0.5)
A 		19
B 8.2
(-2.2)
A 		18.4
(-0.5)
A 		3.2
(-3)
A 		39.5
(3)
M 		36
C 8.6
(-2.7)
A 		7.7
(-3)
A 		7.7
(-3)
A 		26.3
(3)
A 		19
avr 13.1
(-0.6) 		10.1
(-1.5) 		4.8
(-3) 		25.7
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 10.6
(0.4)
A 		16.8
(3)
A 		2.3
(-3)
A 		3.6
(-2.5)
A 		4.1
(-2.3)
A 		7.1
(-1)
A 		15
B 31.4
(3)
A 		4.9
(-2.3)
A 		5.7
(-2.1)
A 		2.1
(-2.8)
A 		3.5
(-2.6)
A 		1.3
(-3)
A 		30
C 44.7
(3)
A 		3.7
(-2.8)
A 		2.1
(-3)
A 		3.9
(-2.7)
A 		6.2
(-2.4)
A 		3.1
(-2.9)
A 		43
avr 28.9
(3) 		8.5
(-1.8) 		3.4
(-3) 		3.2
(-3) 		4.6
(-2.7) 		3.8
(-2.9) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186238_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14839
Sequence Type Exemplar sequence
Representative Public ID T02B11.6 NCBI
Target Description T02B11.6 /REP_DB=WormBase Gene ID /WP=CE13042 /TR=O16976 /GB=AAB69904.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070949 NCBI Caenorhabditis elegans T02B11.6 (T02B11.6) mRNA, complete cds. 11/11 None
SNAP00000007470 ENSEMBL cdna:SNAP chromosome:CEL140:V:884752:889074:-1 11/11 None
GENEFINDER00000007481 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:884752:889074:-1 11/11 None
T02B11.6 ENSEMBL cdna:known chromosome:CEL140:V:884752:889104:-1 gene:T02B11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:884751-889104(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02B11.6
Entrez Gene 178594 Entrez gene
SwissProt O16976 EMBL-EBI
WormBase CE13042 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69904 Hypothetical protein T02B11.6 [Caenorhabditis elegans] ref|NP_503350.1| T02B11.6 [Caenorhabditis elegans] 0.0
blast CAE71053 Hypothetical protein CBG17895 [Caenorhabditis briggsae] 0.0
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-124
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503350.1 12 21-43,75-97,104-123,127-149,161-183,193-215,262-284,289-311,324-346,351-373,386-408,418-440
T02B11.6 12 21-43,75-97,104-123,127-149,161-183,193-215,262-284,289-311,324-346,351-373,386-408,418-440
SNAP00000007470 12 13-35,65-87,94-113,117-139,151-173,183-205,252-274,284-306,319-341,346-368,381-403,413-435
GENEFINDER00000007481 12 13-35,73-95,102-121,125-147,159-181,191-213,260-282,292-314,327-349,354-376,389-411,421-443
Sequence
Target Sequence 
>C. ELEGANS:186238_S_AT
gctctagcctgcacgtggtttaatgcatttatggacctctcaatgtcgattatgatcatc
acatattccccaatctattttcatacgattgagcaaaccgcattcatcattggcatcacc
aactttgcacagctcccattcaaatttggtgcggcttttatcagtgatagaataacttca
ataaatccaaaggctaaaatgctcattttcaacacaatttcctgtggaatagtttcaatt
ttgttcggtggattgggatttatttcgaaggatcaaaaatgggttgcaatgtttttactg
attgcagtgaattgtctaatgtcgacaaactgcgcaggcttctatcagtgcgggagacat
gtatctcaacaattcgcggatgtcgtaattgctgctattcaattctgcaagtgcctggcc
ctattctttgtgccagcaatagtggcggctaccgtaaccgacgagtctgaccggggccag
tggtcccacgcgtttctcgtcatgtccgggctgcttttggtggcaaatttttctgcctat
ttcttctttaccgaccagccagccgattttacgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTAGCCTGCACGTGGTTTAATG 558 299 784 Antisense
TGATCATCACATATTCCCCAATCTA 477 563 836 Antisense
AAACCGCATTCATCATTGGCATCAC 563 125 878 Antisense
TTGGCATCACCAACTTTGCACAGCT 607 707 893 Antisense
GACAAACTGCGCAGGCTTCTATCAG 64 367 1107 Antisense
TTCGCGGATGTCGTAATTGCTGCTA 504 697 1156 Antisense
ATTCAATTCTGCAAGTGCCTGGCCC 214 11 1180 Antisense
TGGCCCTATTCTTTGTGCCAGCAAT 262 545 1199 Antisense
CTACCGTAACCGACGAGTCTGACCG 590 223 1232 Antisense
GGCAAATTTTTCTGCCTATTTCTTC 453 529 1305 Antisense
GACCAGCCAGCCGATTTTACGAAAT 70 383 1336 Antisense
Sequence Source Affymetrix Proprietary Database