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[186236_s_at] --- /// --- /// --- /// ---

Description R09E12.6 /REP_DB=WormBase Gene ID /WP=CE12652 /TR=O16256 /GB=AAG24174.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 16      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 1.5
(-3)
A 		27.3
(-0.9)
A 		28.2
(-0.9)
A 		76.7
(3)
A 		75
B 1.6
(-3)
A 		16.1
(0.8)
A 		24.5
(3)
A 		6.1
(-1.8)
A 		23
C 4.7
(-2.8)
A 		4.4
(-2.9)
A 		2.7
(-3)
A 		75.7
(3)
A 		73
avr 2.6
(-3) 		15.9
(-1.4) 		18.5
(-1.1) 		52.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 53.6
(3)
A 		1
(-3)
A 		19.1
(-0.9)
A 		20.3
(-0.8)
A 		25.1
(-0.3)
A 		29.6
(0.3)
A 		53
B 4.7
(-3)
A 		7.3
(-2.5)
A 		15.1
(-0.9)
A 		8.1
(-2.3)
A 		21.9
(0.5)
A 		33.9
(3)
M 		29
C 6.8
(-3)
A 		33
(1.6)
P 		20.5
(-0.6)
A 		22.8
(-0.2)
A 		25.3
(0.2)
A 		41.3
(3)
A 		35
avr 21.7
(-0.8) 		13.8
(-3) 		18.2
(-1.7) 		17.1
(-2.1) 		24.1
(-0.1) 		34.9
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.6
(-3)
A 		5.9
(0)
A 		7.4
(0.8)
A 		11.2
(3)
A 		11
B 0.5
(-3)
A 		4
(1)
A 		5.7
(3)
A 		1.3
(-2.1)
A 		5
C 1.5
(-2.7)
A 		1.3
(-2.8)
A 		0.9
(-3)
A 		12.8
(3)
A 		12
avr 0.9
(-3) 		3.7
(-0.8) 		4.7
(0) 		8.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.9
(3)
A 		0.4
(-3)
A 		4.2
(-0.6)
A 		5.2
(0)
A 		7.6
(1.5)
A 		7.2
(1.3)
A 		10
B 1.6
(-3)
A 		2.4
(-2.6)
A 		3.7
(-1.9)
A 		2.1
(-2.7)
A 		8.9
(1)
A 		12.6
(3)
M 		11
C 2.5
(-3)
A 		10.1
(1)
P 		5.2
(-1.6)
A 		4.6
(-1.9)
A 		8.2
(0)
A 		13.8
(3)
A 		11
avr 4.7
(-2.4) 		4.3
(-2.8) 		4.4
(-2.7) 		4
(-3) 		8.2
(0.5) 		11.2
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186236_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14940
Sequence Type Exemplar sequence
Representative Public ID R09E12.6 NCBI
Target Description R09E12.6 /REP_DB=WormBase Gene ID /WP=CE12652 /TR=O16256 /GB=AAG24174.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070919(11), NM_061506(11), NM_071521(11), NM_064648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070919 NCBI Caenorhabditis elegans R09E12.6 (R09E12.6) mRNA, complete cds. 11/11 A 
NM_061506 NCBI Caenorhabditis elegans K02E7.3 (K02E7.3) mRNA, complete cds. 11/11 A 
NM_071521 NCBI Caenorhabditis elegans C17B7.7 (C17B7.7) mRNA, complete cds. 11/11 A 
NM_064648 NCBI Caenorhabditis elegans K02B7.1 (K02B7.1) mRNA, complete cds. 11/11 A 
SNAP00000001042 ENSEMBL cdna:SNAP chromosome:CEL140:II:14688052:14690943:1 11/11 None
GENEFINDER00000001049 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14688052:14690943:1 11/11 None
SNAP00000023030 ENSEMBL cdna:SNAP chromosome:CEL140:II:1076368:1079259:1 11/11 None
GENEFINDER00000023036 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1076368:1079259:1 11/11 None
SNAP00000014998 ENSEMBL cdna:SNAP chromosome:CEL140:IV:702240:705131:1 11/11 None
GENEFINDER00000015021 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:702240:705131:1 11/11 None
SNAP00000041678 ENSEMBL cdna:SNAP chromosome:CEL140:IV:508022:510913:1 11/11 None
GENEFINDER00000041689 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:508022:510913:1 11/11 None
SNAP00000015610 ENSEMBL cdna:SNAP chromosome:CEL140:V:764862:768840:1 11/11 None
GENEFINDER00000015616 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:764862:768840:1 11/11 None
SNAP00000020304 ENSEMBL cdna:SNAP chromosome:CEL140:V:3325278:3328169:1 11/11 None
GENEFINDER00000020326 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3325278:3328169:1 11/11 None
K02E7.3 ENSEMBL cdna:known chromosome:CEL140:II:1076368:1079259:1 gene:K02E7.3 11/11 A 
K02B7.1 ENSEMBL cdna:known chromosome:CEL140:II:14688052:14690943:1 gene:K02B7.1 11/11 A 
R09E12.6 ENSEMBL cdna:known chromosome:CEL140:V:765949:768840:1 gene:R09E12.6 11/11 A 
C17B7.7 ENSEMBL cdna:known chromosome:CEL140:V:3325278:3330250:1 gene:C17B7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title



Ensembl K02E7.3
K02B7.1
R09E12.6
C17B7.7
Entrez Gene 178765 Entrez gene
186866 Entrez gene
186887 Entrez gene
187748 Entrez gene
SwissProt O45152 EMBL-EBI
O45635 EMBL-EBI
O17258 EMBL-EBI
O16256 EMBL-EBI
WormBase CE16855 Wormbase
CE16203 Wormbase
CE11626 Wormbase
CE12652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24174 Hypothetical protein R09E12.6 [Caenorhabditis elegans] ref|NP_503320.1| R09E12.6 [Caenorhabditis elegans] 0.0
blast AAB71023 Hypothetical protein K02E7.3 [Caenorhabditis elegans] ref|NP_493907.1| K02E7.3 [Caenorhabditis elegans] 0.0
blast ABA03110 Hypothetical protein W03G1.4 [Caenorhabditis elegans] pir||C88628 protein W03G1.4 [imported] - Caenorhabditis elegans 0.0
blast AAC04401 Hypothetical protein C17B7.7 [Caenorhabditis elegans] ref|NP_503922.1| C17B7.7 [Caenorhabditis elegans] 0.0
blast ABA03108 Hypothetical protein Y55F3C.6 [Caenorhabditis elegans] 0.0
blast CAB05538 Hypothetical protein K02B7.1 [Caenorhabditis elegans] ref|NP_497049.1| K02B7.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.9E-39
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 2.9E-111
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015610 4 5-27,40-59,87-109,118-135
GENEFINDER00000015616 4 5-27,40-59,87-109,118-135
Sequence
Target Sequence 
>C. ELEGANS:186236_S_AT
gaatatgctcgcgtacgatttgcaaagattattgggatgctgttgaaggaaaacaacact
gatcttcgttttattttgaagaaatactgcaacacaaatgatcatttgattgacatatcg
aacaagttatatgaagaggatgtaccgcaaatgcatattcaaaactgggttgattcagtt
tcaaaatcgagtttcggaggtcgtgtcacgttaacaaacacagttgtcgtggtttccgcc
gattccattgttggacatgcagtggttgtgaagcgaaataacaactgtgtggctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATGCTCGCGTACGATTTGCAA 149 327 2104 Antisense
AAGATTATTGGGATGCTGTTGAAGG 245 155 2128 Antisense
ACAACACTGATCTTCGTTTTATTTT 72 113 2156 Antisense
AATACTGCAACACAAATGATCATTT 12 173 2186 Antisense
GATCATTTGATTGACATATCGAACA 245 421 2203 Antisense
GAGGATGTACCGCAAATGCATATTC 680 403 2239 Antisense
CGAGTTTCGGAGGTCGTGTCACGTT 93 249 2291 Antisense
GGTCGTGTCACGTTAACAAACACAG 635 499 2302 Antisense
CAAACACAGTTGTCGTGGTTTCCGC 497 191 2318 Antisense
CATTGTTGGACATGCAGTGGTTGTG 141 217 2349 Antisense
GCGAAATAACAACTGTGTGGCTCTT 568 289 2376 Antisense
Sequence Source Affymetrix Proprietary Database