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[186234_at] 7TM chemoreceptor, srb family

Description C54F6.11 /REP_DB=WormBase Gene ID /WP=CE08983 /TR=O16445 /GB=AAG24013.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 14      4grp_total > 36      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 93.6
(2.5)
A 		96.7
(3)
P 		90.6
(2)
P 		59.1
(-3)
A 		38
B 81.8
(0.1)
P 		120.8
(3)
P 		40.2
(-3)
A 		81.1
(0)
P 		81
C 122.9
(0.3)
P 		150.7
(1.8)
P 		61.8
(-3)
P 		173.2
(3)
P 		111
avr 99.4
(0.6) 		122.7
(3) 		64.2
(-3) 		104.5
(1.1) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 143.5
(3)
A 		103.4
(0.4)
P 		110.2
(0.9)
A 		69.4
(-1.7)
A 		83.5
(-0.8)
A 		49.6
(-3)
A 		94
B 95.3
(0.5)
A 		117.5
(3)
M 		70.6
(-2.4)
A 		97.8
(0.7)
A 		65.6
(-2.9)
A 		65
(-3)
A 		53
C 103.4
(1.8)
P 		116.7
(2.9)
P 		100.5
(1.5)
M 		118.1
(3)
A 		45.7
(-3)
A 		100.5
(1.5)
P 		72
avr 114.1
(3) 		112.5
(2.8) 		93.8
(0.5) 		95.1
(0.7) 		64.9
(-3) 		71.7
(-2.2) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 34.1
(3)
A 		21
(-0.1)
P 		23.7
(0.6)
P 		8.6
(-3)
A 		26
B 26.1
(1.9)
P 		29.8
(3)
P 		9.3
(-3)
A 		17.3
(-0.7)
P 		21
C 40.7
(2.3)
P 		43.3
(3)
P 		21.5
(-3)
P 		29.2
(-0.9)
P 		22
avr 33.6
(3) 		31.4
(2.1) 		18.2
(-3) 		18.4
(-2.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 26.5
(0.5)
A 		36.8
(3)
P 		24
(-0.1)
A 		17.6
(-1.7)
A 		25.2
(0.2)
A 		12.1
(-3)
A 		25
B 33.1
(1.4)
A 		39.1
(3)
M 		17.2
(-3)
A 		25.9
(-0.6)
A 		26.7
(-0.4)
A 		24.3
(-1.1)
A 		22
C 38.3
(3)
P 		35.6
(2.3)
P 		25.6
(-0.2)
M 		23.8
(-0.7)
A 		14.8
(-3)
A 		33.6
(1.8)
P 		24
avr 32.6
(1.2) 		37.2
(3) 		22.3
(-3) 		22.4
(-2.9) 		22.2
(-3) 		23.3
(-2.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11357
Sequence Type Exemplar sequence
Representative Public ID C54F6.11 NCBI
Target Description C54F6.11 /REP_DB=WormBase Gene ID /WP=CE08983 /TR=O16445 /GB=AAG24013.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072535(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072535 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-19) (srb-19) mRNA, complete cds. 10/11 None
SNAP00000031620 ENSEMBL cdna:SNAP chromosome:CEL140:V:7520277:7522691:-1 11/11 None
GENEFINDER00000031637 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7520277:7522691:-1 10/11 None
C54F6.11 ENSEMBL cdna:known chromosome:CEL140:V:7520277:7524956:-1 gene:C54F6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7520277-7524957(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-19
Ensembl C54F6.11
Entrez Gene 183809 Entrez gene
SwissProt Q5CCI8 EMBL-EBI
WormBase CE38166 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504936 Serpentine Receptor, class B (beta) family member (srb-19) [Caenorhabditis elegans] gb|AAX22290.1| Serpentine receptor, class b (beta) protein 19 [Caenorhabditis elegans] 0.0
blast T31862 hypothetical protein C54F6.11 - Caenorhabditis elegans 0.0
blast NP_504936 Serpentine Receptor, class B (beta) family member (srb-19) [Caenorhabditis elegans] gb|AAX22290.1| Serpentine receptor, class b (beta) protein 19 [Caenorhabditis elegans] 1.0E-165
blast CAE57787 Hypothetical protein CBG00809 [Caenorhabditis briggsae] 1.0E-136
blast CAE57787 Hypothetical protein CBG00809 [Caenorhabditis briggsae] 1.0E-124
blast T31862 hypothetical protein C54F6.11 - Caenorhabditis elegans 1.0E-108
blast CAE57785 Hypothetical protein CBG00807 [Caenorhabditis briggsae] 1.0E-101
blast CAE57787 Hypothetical protein CBG00809 [Caenorhabditis briggsae] 1.0E-101
blast NP_504936 Serpentine Receptor, class B (beta) family member (srb-19) [Caenorhabditis elegans] gb|AAX22290.1| Serpentine receptor, class b (beta) protein 19 [Caenorhabditis elegans] 2.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504936.2 8 16-38,87-109,121-143,171-193,206-228,250-272,301-323,338-360
C54F6.11 4 227-244,259-281,328-350,365-387
SNAP00000031620 5 61-83,124-146,161-183,222-244,259-281
GENEFINDER00000031637 6 66-83,126-148,161-183,205-227,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:186234_AT
gccacgtcatggtactaccgtacagctcaggcatcacaggtggtgttcagctcaatggga
ttagttgttttgacagtctatgctctgaaatattcatcaaaacatatgttaccaagtaat
gttcgagtcttggtaaatattattcttattctaatgtttacacattcaattgatatgatt
atttttcatgtctatcatatattcagatcctacaaagcagtggaatcggatccttgctct
gtacgggttaaaatttctttttgtgctccgttccgaagccgcttcgaaatcataagccat
ttcactgcatcagttgacgtggattcttcagaatttctttacattgtaaccatcagccaa
gccgtgtttatagtggtatacccagttttgtcactttcaatgagatatttctacgcggaa
acttacagaccagttcatctcacaattgctacacttgtttatgtgttcgatatttattgt
ttcgttgttccacttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGTCATGGTACTACCGTACAG 541 279 661 Antisense
TACCGTACAGCTCAGGCATCACAGG 355 649 676 Antisense
CACAGGTGGTGTTCAGCTCAATGGG 344 195 695 Antisense
GCAGTGGAATCGGATCCTTGCTCTG 625 311 877 Antisense
ATCCTTGCTCTGTACGGGTTAAAAT 260 39 890 Antisense
CTCCGTTCCGAAGCCGCTTCGAAAT 596 229 926 Antisense
CATAAGCCATTTCACTGCATCAGTT 186 213 951 Antisense
TAACCATCAGCCAAGCCGTGTTTAT 636 637 1007 Antisense
GGTATACCCAGTTTTGTCACTTTCA 616 503 1035 Antisense
GACCAGTTCATCTCACAATTGCTAC 700 383 1088 Antisense
TTATTGTTTCGTTGTTCCACTTGCT 234 679 1134 Antisense
Sequence Source Affymetrix Proprietary Database