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[186233_at]

Description C45H4.11 /REP_DB=WormBase Gene ID /WP=CE08744 /TR=O44692 /GB=AAC25877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 83      6grp_total > 74      4grp_total > 12      6grp_cgc > 66      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 47
(-3)
P 		50.5
(-2.8)
A 		51.6
(-2.7)
A 		146.5
(3)
P 		100
B 64.3
(-0.5)
P 		63.7
(-0.5)
A 		17.2
(-3)
A 		128.7
(3)
P 		112
C 86.3
(-0.6)
P 		39.3
(-2.6)
A 		30.6
(-3)
A 		172.6
(3)
P 		142
avr 65.9
(-1.3) 		51.2
(-2.1) 		33.1
(-3) 		149.3
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 61.9
(-3)
A 		80.2
(-0.8)
P 		111.4
(3)
P 		105.8
(2.3)
P 		99.7
(1.6)
P 		102.5
(1.9)
P 		50
B 49.6
(-3)
A 		86.4
(-0.4)
P 		94.1
(0.2)
P 		133.4
(3)
P 		92.6
(0.1)
P 		79.7
(-0.8)
A 		84
C 62.5
(-2)
P 		85
(0.9)
P 		65.5
(-1.6)
P 		90.1
(1.5)
A 		54.5
(-3)
A 		101.5
(3)
P 		47
avr 58
(-3) 		83.9
(0) 		90.3
(0.7) 		109.8
(3) 		82.3
(-0.2) 		94.6
(1.2) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 17.1
(0.5)
P 		11
(-3)
A 		13.5
(-1.6)
A 		21.4
(3)
P 		10
B 20.5
(1.2)
P 		15.7
(0)
A 		4
(-3)
A 		27.4
(3)
P 		23
C 28.6
(2.8)
P 		11.3
(-2.8)
A 		10.7
(-3)
A 		29.1
(3)
P 		18
avr 22.1
(1.6) 		12.7
(-1.8) 		9.4
(-3) 		26
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.4
(-3)
A 		28.5
(2.5)
P 		24.3
(1.1)
P 		26.8
(1.9)
P 		30.1
(3)
P 		25
(1.4)
P 		19
B 17.2
(-3)
A 		28.8
(0.4)
P 		22.9
(-1.3)
P 		35.3
(2.3)
P 		37.6
(3)
P 		29.7
(0.7)
A 		20
C 23.2
(-0.7)
P 		25.9
(0.2)
P 		16.7
(-3)
P 		18.1
(-2.5)
A 		17.6
(-2.7)
A 		34
(3)
P 		17
avr 17.3
(-3) 		27.7
(2.1) 		21.3
(-1) 		26.7
(1.6) 		28.4
(2.4) 		29.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15624
Sequence Type Exemplar sequence
Representative Public ID C45H4.11 NCBI
Target Description C45H4.11 /REP_DB=WormBase Gene ID /WP=CE08744 /TR=O44692 /GB=AAC25877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071179(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071179 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-20) (srbc-20) mRNA, complete cds. 9/11 None
C45H4.11 ENSEMBL cdna:known chromosome:CEL140:V:2146923:2148450:1 gene:C45H4.11 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009338 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2147314-2148425(+) 95.82 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-20
Ensembl C45H4.11
Entrez Gene 183492 Entrez gene
SwissProt O44692 EMBL-EBI
WormBase CE38046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25877 Serpentine receptor, class bc (class b-like) protein 20 [Caenorhabditis elegans] ref|NP_503580.2| Serpentine Receptor, class BC (class B-like) family member (srbc-20) [Caenorhabditis elegans] 1.0E-151
blast AAB70672 Serpentine receptor, class bc (class b-like) protein 13 [Caenorhabditis elegans] ref|NP_503340.1| Serpentine Receptor, class BC (class B-like) family member (srbc-13) [Caenorhabditis elegans] 2.0E-81
blast AAB70671 Serpentine receptor, class bc (class b-like) protein 12 [Caenorhabditis elegans] ref|NP_503341.2| Serpentine Receptor, class BC (class B-like) family member (srbc-12) [Caenorhabditis elegans] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.5E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503580.2 7 5-27,40-59,79-101,122-144,170-192,212-234,244-266
C45H4.11 7 5-27,40-59,79-101,122-144,170-192,212-234,244-266
Sequence
Target Sequence 
>C. ELEGANS:186233_AT
gttcatttctgtggagcgggttgtggcatcctactttccaatttttttccacaatcatcg
aaagttccgatttaaagtgttcataatgattttagctgttttctatgggctcaccgaaga
tattgtgctctatgtgttttgcgactttcaacttaaactagtcccaaattgtgtagcatt
tggttgtactatcaatgcatgctatcatcaatattggatcactcacagaatgacagtttt
cgcgttgatgtttttattttcaatattcttggcctcaaaattatttatgctcaggaaaag
caaaaatgttgggaagaacgagcaatttagaatgaaccgtctcgcgttaattgacattgg
caatgtaactcttttcgagttttttccaattttcctcgcaaaccagctctctaaatattt
taattttaaagtaattttttccagcttttcagtgtctgaatataaaattgcagagccttg
ggccatatggaatatcaataaaaatgctgggatgcgctgtggaagctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATTTCTGTGGAGCGGGTTGTG 152 443 96 Antisense
TGTGGCATCCTACTTTCCAATTTTT 694 553 117 Antisense
TCCAATTTTTTTCCACAATCATCGA 225 587 132 Antisense
TTAGCTGTTTTCTATGGGCTCACCG 314 679 187 Antisense
GCTCTATGTGTTTTGCGACTTTCAA 68 301 222 Antisense
GAATGACAGTTTTCGCGTTGATGTT 496 331 323 Antisense
GAATGAACCGTCTCGCGTTAATTGA 480 325 425 Antisense
CCTCGCAAACCAGCTCTCTAAATAT 252 267 489 Antisense
TTTTCCAGCTTTTCAGTGTCTGAAT 642 677 532 Antisense
ATTGCAGAGCCTTGGGCCATATGGA 407 5 562 Antisense
GCTGGGATGCGCTGTGGAAGCTGTA 289 295 601 Antisense
Sequence Source Affymetrix Proprietary Database