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[186232_s_at]

Description C44B12.1 /REP_DB=WormBase Gene ID /WP=CE27850 /TR=O44145 /GB=AAB88324.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 11.8
(-3)
A 		26.1
(-2.5)
A 		15.5
(-2.9)
A 		193
(3)
A 		181
B 14.6
(-3)
A 		18.6
(-2.9)
A 		23.9
(-2.7)
A 		206.3
(3)
A 		192
C 30.7
(0.9)
A 		39.5
(3)
A 		14.3
(-3)
A 		36.3
(2.2)
A 		25
avr 19
(-2.9) 		28.1
(-2.5) 		17.9
(-3) 		145.2
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2226
1 2 3 4 5 6 range
A 52
(-2.9)
A 		19.1
(-3)
A 		19.7
(-3)
A 		12
(-3)
A 		1817.4
(3)
P 		1288.9
(1.2)
P 		1805
B 19.9
(-3)
A 		64.8
(-2.9)
A 		41.5
(-2.9)
A 		41
(-2.9)
A 		2002.4
(3)
P 		1493.7
(1.5)
P 		1983
C 4.5
(-3)
A 		72.2
(-2.8)
A 		53
(-2.9)
A 		67.2
(-2.8)
A 		2230.2
(3)
P 		1405.7
(0.8)
P 		2226
avr 25.5
(-3) 		52
(-2.9) 		38.1
(-3) 		40.1
(-3) 		2016.7
(3) 		1396.1
(1.1) 		1991
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.3
(-2.9)
A 		5.7
(-2.6)
A 		4
(-3)
A 		28.2
(3)
A 		24
B 4.7
(-3)
A 		4.6
(-3)
A 		5.5
(-2.9)
A 		44
(3)
A 		39
C 10.2
(1.9)
A 		11.4
(3)
A 		5
(-3)
A 		6.1
(-2)
A 		6
avr 6.4
(-2.5) 		7.2
(-2.3) 		4.8
(-3) 		26.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 812
1 2 3 4 5 6 range
A 9.6
(-2.9)
A 		6.8
(-3)
A 		4.3
(-3)
A 		3
(-3)
A 		548.4
(3)
P 		313.8
(0.4)
P 		545
B 6.9
(-3)
A 		21.6
(-2.9)
A 		10.1
(-3)
A 		10.9
(-3)
A 		813.6
(3)
P 		557
(1.1)
P 		807
C 1.7
(-3)
A 		22
(-2.8)
A 		13.5
(-2.9)
A 		13.5
(-2.9)
A 		721.7
(3)
P 		470.6
(0.9)
P 		720
avr 6.1
(-3) 		16.8
(-2.9) 		9.3
(-3) 		9.1
(-3) 		694.6
(3) 		447.1
(0.8) 		689
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186232_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10498
Sequence Type Exemplar sequence
Representative Public ID C44B12.1 NCBI
Target Description C44B12.1 /REP_DB=WormBase Gene ID /WP=CE27850 /TR=O44145 /GB=AAB88324.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067641 NCBI Caenorhabditis elegans C44B12.1 (C44B12.1) mRNA, complete cds. 11/11 A 
SNAP00000003000 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1126801:1128752:1 9/11 None
GENEFINDER00000003006 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1126801:1128752:1 9/11 None
C44B12.1 ENSEMBL cdna:known chromosome:CEL140:IV:1126801:1128856:1 gene:C44B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1126806-1128880(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B12.1
Entrez Gene 176933 Entrez gene
SwissProt O44145 EMBL-EBI
WormBase CE27850 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500042 C44B12.1 [Caenorhabditis elegans] gb|AAB88324.2| Hypothetical protein C44B12.1 [Caenorhabditis elegans] 3.0E-85
blast CAE68278 Hypothetical protein CBG13961 [Caenorhabditis briggsae] 2.0E-65
Sequence
Target Sequence 
>C. ELEGANS:186232_S_AT
accagcaatacgatgctccagcctacggaccatccttcatccagagaccacgcccgttcg
agcgtcaggcttgcagaaacaccgccatctactcgcaggagtcgtgccagaactgctgct
ccatctcgtcccgtgccgctggaagctcatcggttagtgcggaaagtcgtcggaattctg
atgatcttcgacccgaagctgtccgccgacaagaagcaccacaagaaggacgacgactta
aactcgccagaccgtgctcttcaatgcgtgtgctgcacctcgagaagagtgtaattcaac
taattccacgtggccaactattttatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGCAATACGATGCTCCAGCCTA 636 85 341 Antisense
CGTTCGAGCGTCAGGCTTGCAGAAA 487 245 395 Antisense
TCAGGCTTGCAGAAACACCGCCATC 196 623 405 Antisense
CGCCATCTACTCGCAGGAGTCGTGC 666 257 423 Antisense
CAGGAGTCGTGCCAGAACTGCTGCT 562 207 436 Antisense
GAAGCTGTCCGCCGACAAGAAGCAC 337 343 535 Antisense
GACGACGACTTAAACTCGCCAGACC 703 375 569 Antisense
GTGCTCTTCAATGCGTGTGCTGCAC 188 479 594 Antisense
GTGTGCTGCACCTCGAGAAGAGTGT 11 487 608 Antisense
AATTCAACTAATTCCACGTGGCCAA 33 177 633 Antisense
CCACGTGGCCAACTATTTTATCGAT 693 273 646 Antisense
Sequence Source Affymetrix Proprietary Database