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[186229_at]

Description F45F2.10 /REP_DB=WormBase Gene ID /WP=CE10534 /TR=Q22974 /GB=AAC48031.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      4grp_high_8_8 > 40      6grp_total > 26      4grp_total > 63      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 163
(3)
M 		133.7
(-3)
M 		146.7
(-0.3)
A 		154.5
(1.3)
P 		29
B 144.5
(0.7)
P 		139.6
(-3)
M 		147.5
(3)
P 		141.6
(-1.5)
P 		8
C 225.7
(3)
P 		146.7
(-1.8)
P 		207.8
(1.9)
M 		127.8
(-3)
P 		98
avr 177.7
(3) 		140
(-3) 		167.3
(1.3) 		141.3
(-2.8) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 168.4
(-0.8)
P 		239.5
(3)
P 		126.4
(-3)
M 		173.1
(-0.5)
P 		173.6
(-0.5)
P 		189
(0.3)
P 		113
B 204
(3)
P 		189.6
(1.9)
P 		124.8
(-3)
P 		151.7
(-1)
P 		142.7
(-1.6)
P 		143.6
(-1.6)
P 		79
C 216.7
(3)
P 		158.2
(-1.1)
P 		130.4
(-3)
A 		178.8
(0.4)
M 		145.1
(-2)
P 		150.5
(-1.6)
P 		86
avr 196.4
(3) 		195.8
(2.9) 		127.2
(-3) 		167.9
(0.5) 		153.8
(-0.7) 		161
(-0.1) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 59.4
(3)
M 		29
(-2)
M 		38.4
(-0.4)
A 		22.6
(-3)
P 		37
B 46.1
(3)
P 		34.5
(-1.4)
M 		34.2
(-1.5)
P 		30.2
(-3)
P 		16
C 74.7
(3)
P 		42.2
(-0.7)
P 		72.4
(2.7)
M 		21.5
(-3)
P 		53
avr 60.1
(3) 		35.2
(-1.2) 		48.3
(1) 		24.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 31
(-2.6)
P 		85.2
(3)
P 		27.5
(-3)
M 		43.9
(-1.3)
P 		52.4
(-0.4)
P 		46
(-1.1)
P 		58
B 71
(3)
P 		63.1
(1.8)
P 		30.3
(-3)
P 		40.2
(-1.5)
P 		58
(1.1)
P 		53.5
(0.4)
P 		41
C 80.3
(3)
P 		48.3
(-1.1)
P 		33.2
(-3)
A 		36
(-2.6)
M 		46.9
(-1.3)
P 		50.4
(-0.8)
P 		47
avr 60.8
(2.2) 		65.5
(3) 		30.3
(-3) 		40
(-1.3) 		52.4
(0.8) 		50
(0.4) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12441
Sequence Type Exemplar sequence
Representative Public ID F45F2.10 NCBI
Target Description F45F2.10 /REP_DB=WormBase Gene ID /WP=CE10534 /TR=Q22974 /GB=AAC48031.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072791(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072791 NCBI Caenorhabditis elegans F45F2.10 (F45F2.10) mRNA, complete cds. 10/11 None
SNAP00000030766 ENSEMBL cdna:SNAP chromosome:CEL140:V:8516949:8520899:-1 10/11 None
GENEFINDER00000030789 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8516949:8520899:-1 10/11 None
F45F2.10 ENSEMBL cdna:known chromosome:CEL140:V:8516167:8520903:-1 gene:F45F2.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8516801-8520900(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45F2.10
Entrez Gene 179231 Entrez gene
SwissProt Q22974 EMBL-EBI
WormBase CE28828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48031 Hypothetical protein F45F2.10 [Caenorhabditis elegans] ref|NP_505192.1| F45F2.10 [Caenorhabditis elegans] 0.0
blast CAE58384 Hypothetical protein CBG01513 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 5.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 38.0
Sequence
Target Sequence 
>C. ELEGANS:186229_AT
tttcaagtaagtttccatttccctgaaaatttacgcaattttttagataatttagagaca
aagtccaagcaagtgaatgtcacggtgaatctcacgattccggaaactgaaggaaatcga
ttcaaagattgtttcttcatggttcaagctgttcaaattgttgttcgggaacaaccacag
ccgattaatccggctttcgaaagttctcccaattcttttaacttgagaccaagggatccg
agaactgatatgatagccgagaaagtcgctagaatgagaaccgagaaggtgatcgaagaa
gcggcacgacgaaatgaagtggaaatgagagataatcgagttcgtgggatagttgctgat
attgagtcagctatagccttgaaaaagagtaaatcggttcgaggcgaagcaacaacatct
gtgtcttcttctaattcggcttcatccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAAGTAAGTTTCCATTTCCCTG 676 667 2488 Antisense
GTCACGGTGAATCTCACGATTCCGG 519 463 2566 Antisense
GTTTCTTCATGGTTCAAGCTGTTCA 449 449 2618 Antisense
GGAACAACCACAGCCGATTAATCCG 413 527 2655 Antisense
GATTAATCCGGCTTTCGAAAGTTCT 234 425 2670 Antisense
GTTCTCCCAATTCTTTTAACTTGAG 46 441 2690 Antisense
GAGACCAAGGGATCCGAGAACTGAT 91 383 2712 Antisense
TCGAGTTCGTGGGATAGTTGCTGAT 191 603 2823 Antisense
GGTTCGAGGCGAAGCAACAACATCT 465 507 2883 Antisense
AACAACATCTGTGTCTTCTTCTAAT 544 135 2898 Antisense
CTTCTTCTAATTCGGCTTCATCCAG 381 221 2912 Antisense
Sequence Source Affymetrix Proprietary Database