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[186228_at]

Description F28C10.2 /REP_DB=WormBase Gene ID /WP=CE07155 /TR=Q19860 /GB=AAB00609.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 36.8
(-3)
A 		43.8
(-2.6)
A 		38.3
(-2.9)
A 		132.9
(3)
A 		96
B 29.9
(2.2)
A 		11.1
(-2.6)
A 		9.7
(-3)
A 		32.9
(3)
A 		23
C 16.5
(-3)
A 		39.4
(-1.9)
A 		34.3
(-2.1)
A 		136.5
(3)
A 		120
avr 27.7
(-3) 		31.4
(-2.7) 		27.4
(-3) 		100.8
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 51.5
(3)
A 		17.9
(-1.5)
A 		7.1
(-3)
A 		7.5
(-2.9)
A 		32.2
(0.4)
A 		28.5
(-0.1)
A 		44
B 30.5
(1.5)
A 		36.6
(2.7)
A 		37.9
(3)
A 		33.8
(2.2)
A 		36.7
(2.8)
A 		8.3
(-3)
A 		30
C 24
(-1)
A 		58.7
(2.4)
A 		64.5
(3)
A 		3.4
(-3)
A 		40.3
(0.6)
A 		6.1
(-2.7)
A 		61
avr 35.3
(2.4) 		37.7
(3) 		36.5
(2.7) 		14.9
(-2.8) 		36.4
(2.7) 		14.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 13.4
(-0.7)
A 		9.5
(-3)
A 		10
(-2.7)
A 		19.5
(3)
A 		10
B 9.5
(3)
A 		2.7
(-2.6)
A 		2.2
(-3)
A 		7
(0.9)
A 		7
C 5.5
(-3)
A 		11.3
(-1)
A 		11.9
(-0.8)
A 		23
(3)
A 		18
avr 9.5
(-1.8) 		7.8
(-3) 		8
(-2.9) 		16.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.5
(2.9)
A 		6.4
(0.6)
A 		1.5
(-3)
A 		1.9
(-2.7)
A 		9.7
(3)
A 		6.9
(1)
A 		8
B 10.6
(0.8)
A 		12.2
(1.6)
A 		9.2
(0.1)
A 		9
(0)
A 		14.9
(3)
A 		3.1
(-3)
A 		12
C 8.9
(-0.1)
A 		17.9
(3)
A 		16.4
(2.5)
A 		0.7
(-3)
A 		13
(1.3)
A 		2
(-2.5)
A 		17
avr 9.7
(1) 		12.2
(2.8) 		9
(0.6) 		3.9
(-3) 		12.5
(3) 		4
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18394
Sequence Type Exemplar sequence
Representative Public ID F28C10.2 NCBI
Target Description F28C10.2 /REP_DB=WormBase Gene ID /WP=CE07155 /TR=Q19860 /GB=AAB00609.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075715 NCBI Caenorhabditis elegans F28C10.2 (F28C10.2) mRNA, complete cds. 11/11 None
SNAP00000036538 ENSEMBL cdna:SNAP chromosome:CEL140:X:541637:542350:1 11/11 None
GENEFINDER00000036542 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:541637:542350:1 11/11 None
F28C10.2 ENSEMBL cdna:known chromosome:CEL140:X:541637:542350:1 gene:F28C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:541636-542350(+) 66.39 100.0
Public Domain and Genome References
Gene Title
Ensembl F28C10.2
Entrez Gene 185051 Entrez gene
SwissProt Q19860 EMBL-EBI
WormBase CE07155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00609 Hypothetical protein F28C10.2 [Caenorhabditis elegans] ref|NP_508116.1| F28C10.2 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:186228_AT
gagaacgtctctgatgatgccaagaaaagatcattctgaagattctacagcttccacgtt
agctatgaaagatcagtttgataagcataatagagcaaaagcaagatattttcatgaaga
tgaaaaagtgtttgctaaagtgtacgaaagaaatagctggtcatggaaaccaggaaaagt
tgctaacaagcaaggaaaagtagtatatgtcaacatattagatgatggaagagaaagagc
ggttcatgcaaatcagctaaagccaagagttgatgaaaaagagaccgtcagggtaaatgc
atggaaagatactatgagtgacacttctgagttgttaccatatgataacgaggattatga
agttattgaaagaaagactaaattgccaactatcatgccaacactgaaggaggacaattc
tggaagttcaagttcaacgactccagctcagccagttcagtcgccagttgttcaaggacc
agttcaaggagatcacgctcagcagcaggatgctctggttcttttgccgaatgctcgagg
accatcacgtgcaacatcgccagttccgattagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACGTCTCTGATGATGCCAAGA 211 393 108 Antisense
AAGATTCTACAGCTTCCACGTTAGC 55 157 146 Antisense
AGAGCGGTTCATGCAAATCAGCTAA 495 69 343 Antisense
GAGTGACACTTCTGAGTTGTTACCA 298 401 423 Antisense
AATTGCCAACTATCATGCCAACACT 118 179 488 Antisense
CAGTTCAGTCGCCAGTTGTTCAAGG 660 205 560 Antisense
GAGATCACGCTCAGCAGCAGGATGC 272 397 596 Antisense
AGCAGGATGCTCTGGTTCTTTTGCC 604 75 611 Antisense
TCTGGTTCTTTTGCCGAATGCTCGA 89 607 621 Antisense
AATGCTCGAGGACCATCACGTGCAA 700 165 637 Antisense
GCAACATCGCCAGTTCCGATTAGAC 448 319 658 Antisense
Sequence Source Affymetrix Proprietary Database