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[186226_at]

Description W06A11.4 /REP_DB=WormBase Gene ID /WP=CE05042 /TR=Q23180 /GB=AAA82409.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 25.2
(-2.1)
A 		16.8
(-3)
A 		23.8
(-2.3)
A 		74.6
(3)
A 		58
B 44
(2.1)
A 		11.1
(-3)
A 		26
(-0.7)
A 		49.8
(3)
A 		39
C 43.2
(-0.9)
A 		52.2
(-0.2)
A 		14.4
(-3)
A 		95.6
(3)
P 		81
avr 37.5
(-1.1) 		26.7
(-2.4) 		21.4
(-3) 		73.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 31
(-3)
A 		34.3
(-2.7)
A 		59.8
(0)
A 		36.4
(-2.4)
A 		38.4
(-2.2)
A 		88.4
(3)
A 		57
B 51.2
(0.7)
A 		53.4
(0.9)
A 		14.7
(-3)
A 		54.5
(1)
A 		74.4
(3)
A 		68.7
(2.4)
M 		60
C 30.2
(-2.7)
A 		48.6
(-0.9)
A 		43
(-1.4)
A 		30.7
(-2.6)
A 		26.5
(-3)
A 		90
(3)
P 		64
avr 37.5
(-3) 		45.4
(-1.9) 		39.2
(-2.8) 		40.5
(-2.6) 		46.4
(-1.8) 		82.4
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.2
(1.6)
A 		3.7
(-3)
A 		6.2
(-0.9)
A 		10.9
(3)
A 		7
B 14
(3)
A 		2.7
(-3)
A 		6
(-1.2)
A 		10.6
(1.2)
A 		11
C 14.3
(2)
A 		15
(2.4)
A 		5
(-3)
A 		16.1
(3)
P 		11
avr 12.5
(3) 		7.1
(-1.8) 		5.7
(-3) 		12.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.7
(-3)
A 		12.2
(-0.5)
A 		13
(-0.2)
A 		9.2
(-1.7)
A 		11.6
(-0.8)
A 		21.5
(3)
A 		16
B 17.8
(0.2)
A 		17.8
(0.2)
A 		3.6
(-3)
A 		14.4
(-0.6)
A 		30.2
(3)
A 		25.6
(2)
M 		27
C 11.2
(-1.7)
A 		14.8
(-0.8)
A 		11
(-1.8)
A 		6.2
(-3)
A 		8.6
(-2.4)
A 		30.1
(3)
P 		24
avr 11.6
(-2.1) 		14.9
(-0.9) 		9.2
(-3) 		9.9
(-2.7) 		16.8
(-0.2) 		25.7
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5348
Sequence Type Exemplar sequence
Representative Public ID W06A11.4 NCBI
Target Description W06A11.4 /REP_DB=WormBase Gene ID /WP=CE05042 /TR=Q23180 /GB=AAA82409.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062314 NCBI Caenorhabditis elegans W06A11.4 (W06A11.4) mRNA, complete cds. 11/11 A 
SNAP00000019977 ENSEMBL cdna:SNAP chromosome:CEL140:II:4056481:4057647:1 11/11 None
GENEFINDER00000019982 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4056481:4058627:1 11/11 None
W06A11.4 ENSEMBL cdna:known chromosome:CEL140:II:4055933:4057647:1 gene:W06A11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4055931-4057646(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06A11.4
Entrez Gene 189235 Entrez gene
SwissProt Q23180 EMBL-EBI
WormBase CE05042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82409 Hypothetical protein W06A11.4 [Caenorhabditis elegans] ref|NP_494715.1| W06A11.4 [Caenorhabditis elegans] 0.0
blast AAA82409 Hypothetical protein W06A11.4 [Caenorhabditis elegans] ref|NP_494715.1| W06A11.4 [Caenorhabditis elegans] 1.0E-169
blast AAA82409 Hypothetical protein W06A11.4 [Caenorhabditis elegans] ref|NP_494715.1| W06A11.4 [Caenorhabditis elegans] 1.0E-165
blast AAB37920 Hypothetical protein ZC204.14 [Caenorhabditis elegans] ref|NP_494031.1| ZC204.14 [Caenorhabditis elegans] 2.0E-27
blast AAB37920 Hypothetical protein ZC204.14 [Caenorhabditis elegans] ref|NP_494031.1| ZC204.14 [Caenorhabditis elegans] 3.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019982 1 320-342
Sequence
Target Sequence 
>C. ELEGANS:186226_AT
cagtgttccacctcaattggcagtggaatctgatgaagaaattctggacaaattgattcg
agaaagcgaagctccaatcaaagatcgtcccaagaaacgtttcaattataaaaaatccgc
aaatggagatcactcgtctgttttgaatccgtctggtcaatacaaaaacgttctcccgtc
caaaaaaccggtgcaacaaacgataaatagtgctcagccggctgcaccaaatccaattgc
tcaatacaagtctaagatgcctcctccaccaatttcaaatcctgttgctcgatacagatc
tatgatatcgcaacaaatgccgacaatcttgccaagttccgctgccattggacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGTTCCACCTCAATTGGCAGTG 171 207 507 Antisense
GAAGCTCCAATCAAAGATCGTCCCA 441 343 574 Antisense
CACTCGTCTGTTTTGAATCCGTCTG 654 195 637 Antisense
TGGTCAATACAAAAACGTTCTCCCG 648 543 660 Antisense
TAAATAGTGCTCAGCCGGCTGCACC 178 641 710 Antisense
GGCTGCACCAAATCCAATTGCTCAA 151 541 726 Antisense
ATACAAGTCTAAGATGCCTCCTCCA 198 25 750 Antisense
TCCTCCACCAATTTCAAATCCTGTT 526 593 768 Antisense
AAATCCTGTTGCTCGATACAGATCT 259 119 783 Antisense
AATGCCGACAATCTTGCCAAGTTCC 21 167 822 Antisense
CAAGTTCCGCTGCCATTGGACAATT 208 185 839 Antisense
Sequence Source Affymetrix Proprietary Database