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[186224_at]

Description Y57G11C.7 /REP_DB=WormBase Gene ID /WP=CE14938 /TR=O18233 /GB=CAB16509.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 88.2
(-2)
A 		112.9
(-0.6)
A 		70.1
(-3)
A 		178
(3)
P 		108
B 96.5
(-1.3)
A 		179.9
(3)
M 		64.1
(-3)
A 		158
(1.9)
P 		116
C 93.5
(-3)
M 		151
(-0.2)
A 		111.5
(-2.1)
A 		218.9
(3)
P 		125
avr 92.7
(-2.4) 		147.9
(0.8) 		81.9
(-3) 		185
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 142.2
(3)
A 		98.6
(0.4)
A 		94.1
(0.1)
P 		109.4
(1)
A 		115.2
(1.4)
A 		43.1
(-3)
A 		99
B 94.1
(-3)
A 		106.4
(1)
M 		102.6
(-0.2)
A 		97.6
(-1.9)
A 		110.5
(2.3)
P 		112.5
(3)
P 		18
C 96.7
(-3)
A 		111.7
(0.3)
A 		112
(0.4)
A 		123.2
(2.9)
A 		110.2
(0)
P 		123.6
(3)
P 		27
avr 111
(2.7) 		105.6
(1) 		102.9
(0.1) 		110.1
(2.4) 		112
(3) 		93.1
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 32.1
(3)
A 		24.5
(-0.3)
A 		18.3
(-3)
A 		26.1
(0.4)
P 		14
B 30.8
(0.2)
A 		44.4
(3)
M 		14.9
(-3)
A 		33.7
(0.8)
P 		30
C 30.9
(-3)
M 		43.4
(3)
A 		38.9
(0.8)
A 		36.9
(-0.1)
P 		13
avr 31.3
(0.3) 		37.4
(3) 		24
(-3) 		32.2
(0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 26.2
(0.8)
A 		35.1
(3)
A 		20.5
(-0.6)
P 		27.8
(1.2)
A 		34.8
(2.9)
A 		10.5
(-3)
A 		25
B 32.8
(-0.6)
A 		35.4
(0.2)
M 		24.9
(-3)
A 		25.9
(-2.7)
A 		44.9
(3)
P 		42
(2.1)
P 		20
C 35.8
(1)
A 		34.1
(0.4)
A 		28.5
(-1.7)
A 		24.8
(-3)
A 		35.7
(0.9)
P 		41.4
(3)
P 		17
avr 31.6
(0) 		34.9
(1.4) 		24.6
(-3) 		26.2
(-2.3) 		38.5
(3) 		31.3
(-0.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9949
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.7 NCBI
Target Description Y57G11C.7 /REP_DB=WormBase Gene ID /WP=CE14938 /TR=O18233 /GB=CAB16509.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070377 NCBI Caenorhabditis elegans Y57G11C.7 (Y57G11C.7) mRNA, complete cds. 11/11 None
SNAP00000003462 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14754051:14754632:-1 9/11 None
GENEFINDER00000003571 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14753937:14754896:-1 11/11 None
Y57G11C.7 ENSEMBL cdna:known chromosome:CEL140:IV:14754051:14756624:-1 gene:Y57G11C.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14754056-14756630(-) 96.62 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.7
Entrez Gene 190373 Entrez gene
SwissProt O18233 EMBL-EBI
WormBase CE14938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16509 Hypothetical protein Y57G11C.7 [Caenorhabditis elegans] ref|NP_502778.1| Y57G11C.7 [Caenorhabditis elegans] 0.0
blast CAB16509 Hypothetical protein Y57G11C.7 [Caenorhabditis elegans] ref|NP_502778.1| Y57G11C.7 [Caenorhabditis elegans] 1.0E-137
blast CAB16509 Hypothetical protein Y57G11C.7 [Caenorhabditis elegans] ref|NP_502778.1| Y57G11C.7 [Caenorhabditis elegans] 1.0E-108
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 3.0E-28
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 8.0E-26
blast AAC16977 Hypothetical protein C33E10.2 [Caenorhabditis elegans] ref|NP_510807.1| C33E10.2 [Caenorhabditis elegans] 4.0E-23
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.7E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-14
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-14
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-14
Sequence
Target Sequence 
>C. ELEGANS:186224_AT
taatttcagatgctttctctccaaagtgtgccgtcaaatgcgagatgtgatctatagcaa
agatcttggattcaagaaagtgggcgtgcacttcaatatgtattatttgtcactgtgcct
ggataatgtctcattcacctataagaatgacgagtccggttgtaatgcgaaatgcgacgg
tcgccaggatgaattgatcaaaaaagacaaattgaattcgtttttggatgatttcgccat
agtgatgaagaaccgaaaacttcgattggatgaattcgaaatttctggaaatacgttcat
cagttcggaacgtatcgaaacattagaaaccggagtcgtagagtggatgaagaagaattc
gatcatggaaaagcaatttaaaaccaaaaaagtccgtctcgcagaagtgaagtctgatta
tgtaatcgatattctgtctctcttcaaacctggagttctcgaaaaaattgagatcaactg
gaaaaagtggccagcctcttatttcgatgatatcgatgctttgtttgaattggaccaatg
gaaacaggcaaatgttaattggctggcttcgtctacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTCAGATGCTTTCTCTCCAAA 306 635 1110 Antisense
TTCTCTCCAAAGTGTGCCGTCAAAT 698 687 1124 Antisense
GTGGGCGTGCACTTCAATATGTATT 118 489 1189 Antisense
ATGTATTATTTGTCACTGTGCCTGG 45 49 1207 Antisense
ACTGTGCCTGGATAATGTCTCATTC 539 97 1221 Antisense
TGCGACGGTCGCCAGGATGAATTGA 457 583 1282 Antisense
AAGTCCGTCTCGCAGAAGTGAAGTC 302 157 1499 Antisense
TGTAATCGATATTCTGTCTCTCTTC 518 559 1530 Antisense
GTCTCTCTTCAAACCTGGAGTTCTC 261 469 1545 Antisense
AAAGTGGCCAGCCTCTTATTTCGAT 640 121 1593 Antisense
GTTAATTGGCTGGCTTCGTCTACTA 686 445 1663 Antisense
Sequence Source Affymetrix Proprietary Database