[Home] | [Total List]

[186222_at]

Description H14A12.4 /REP_DB=WormBase Gene ID /WP=CE11584 /TR=O17212 /GB=AAB70985.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 21      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 62.7
(1.2)
A 		72.7
(3)
A 		39.3
(-3)
A 		50.5
(-1)
A 		33
B 59.7
(2.3)
M 		32.6
(-3)
A 		63.5
(3)
A 		60.5
(2.4)
A 		31
C 46.4
(0)
A 		45.4
(-0.1)
A 		15.7
(-3)
A 		76.9
(3)
P 		61
avr 56.3
(1.4) 		50.2
(-0.2) 		39.5
(-3) 		62.6
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 68.2
(2.2)
A 		70.1
(2.6)
A 		72.4
(3)
A 		39.8
(-3)
A 		61.7
(1)
A 		43.4
(-2.3)
A 		33
B 49.6
(1.8)
A 		5.1
(-3)
A 		60.9
(3)
A 		51.1
(1.9)
P 		38.9
(0.6)
A 		38.9
(0.6)
A 		56
C 51.4
(-1.3)
A 		109.6
(3)
P 		58.3
(-0.8)
A 		74.3
(0.4)
A 		56.5
(-0.9)
A 		28.9
(-3)
A 		81
avr 56.4
(1.3) 		61.6
(2.5) 		63.9
(3) 		55.1
(1) 		52.4
(0.4) 		37.1
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 22.8
(3)
A 		15.8
(0.3)
A 		10.3
(-1.9)
A 		7.4
(-3)
A 		15
B 19
(3)
M 		8
(-3)
A 		14.7
(0.7)
A 		12.9
(-0.3)
A 		11
C 15.3
(3)
A 		13
(1.6)
A 		5.5
(-3)
A 		13
(1.6)
P 		10
avr 19
(3) 		12.3
(-1.6) 		10.2
(-3) 		11.1
(-2.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 12.6
(-2)
A 		24.9
(3)
A 		15.8
(-0.7)
A 		10.1
(-3)
A 		18.6
(0.4)
A 		10.6
(-2.8)
A 		15
B 17.3
(3)
A 		1.7
(-3)
A 		14.8
(2)
A 		13.5
(1.5)
P 		15.8
(2.4)
A 		14.5
(1.9)
A 		16
C 19
(-0.7)
A 		33.5
(3)
P 		14.8
(-1.7)
A 		14.9
(-1.7)
A 		18.3
(-0.8)
A 		9.7
(-3)
A 		24
avr 16.3
(0.4) 		20
(3) 		15.1
(-0.5) 		12.8
(-2.1) 		17.6
(1.3) 		11.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6665
Sequence Type Exemplar sequence
Representative Public ID H14A12.4 NCBI
Target Description H14A12.4 /REP_DB=WormBase Gene ID /WP=CE11584 /TR=O17212 /GB=AAB70985.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066239 NCBI Caenorhabditis elegans Mesodermal Lineage Specification family member (mls-1) (mls-1) mRNA, complete cds. 11/11 None
GENEFINDER00000033739 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7460882:7461833:1 10/11 None
H14A12.4 ENSEMBL cdna:known chromosome:CEL140:III:7460328:7461833:1 gene:H14A12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033733 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7460325-7461831(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mls-1
Ensembl H14A12.4
Entrez Gene 186741 Entrez gene
SwissProt O17212 EMBL-EBI
WormBase CE11584 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U95AV2:32284_AT T-box 1 hs
HG-U133_PLUS_2:207662_AT T-box 1 hs
HG-U133A:207662_AT T-box 1 hs
HG-FOCUS:207662_AT T-box 1 hs
HG-U133A_2:207662_AT T-box 1 hs
HG-U133_PLUS_2:211274_AT T-box 1 hs
HG-U133A:211274_AT T-box 1 hs
HG-U133A_2:211274_AT T-box 1 hs
HG-U133_PLUS_2:211273_S_AT T-box 1 hs
HG-U133A:211273_S_AT T-box 1 hs
HG-U133A_2:211273_S_AT T-box 1 hs
U133_X3P:G5174710_3P_AT T-box 1 hs
U133_X3P:G2735860_3P_AT T-box 1 hs
U133_X3P:HS.279679.0.A1_3P_AT T-box 1 hs
U133_X3P:HS.166878.0.A1_3P_X_AT T-box 1 hs
U133_X3P:HS.166878.0.A1_3P_S_AT T-box 1 hs
U133_X3P:HS.166878.0.A1_3P_AT T-box 1 hs
U133_X3P:242941_3P_X_AT T-box 1 hs
HG-U133_PLUS_2:236926_AT T-box 1 hs
HG-U133B:236926_AT T-box 1 hs
HG-U133_PLUS_2:242941_X_AT T-box 1 hs
HG-U133B:242941_X_AT T-box 1 hs
HG-U95AV2:32285_G_AT T-box 1 hs
HG-U95AV2:32286_AT T-box 1 hs
HG-U95D:82571_R_AT T-box 1 hs
MOUSE430_2:1425779_A_AT T-box 1 mm
MOE430A:1425779_A_AT T-box 1 mm
MOUSE430A_2:1425779_A_AT T-box 1 mm
MU19KSUBC:TC35801_AT T-box 1 (Tbx1), mRNA mm
RAE230A:1377490_AT T-box 1 (predicted) rn
RAT230_2:1377490_AT T-box 1 (predicted) rn
RAE230B:1378545_AT T-box 1 (predicted) rn
RAT230_2:1378545_AT T-box 1 (predicted) rn
RAE230B:1396786_AT T-box 1 (predicted) rn
RAT230_2:1396786_AT T-box 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70985 Mesodermal lineage specification protein 1 [Caenorhabditis elegans] ref|NP_498640.1| Mesodermal Lineage Specification family member (mls-1) [Caenorhabditis elegans] 1.0E-145
blast CAE64466 Hypothetical protein CBG09183 [Caenorhabditis briggsae] 1.0E-110
blast AAB70985 Mesodermal lineage specification protein 1 [Caenorhabditis elegans] ref|NP_498640.1| Mesodermal Lineage Specification family member (mls-1) [Caenorhabditis elegans] 1.0E-110
blast CAE64466 Hypothetical protein CBG09183 [Caenorhabditis briggsae] 5.0E-88
blast AAG34887 T-box protein AmphiTbx1/10 [Branchiostoma floridae] 2.0E-59
blast XP_790408 PREDICTED: similar to T-box 1 [Strongylocentrotus purpuratus] 6.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 1.0E-126
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 7.7E-117
Sequence
Target Sequence 
>C. ELEGANS:186222_AT
agaatgtttcctaccttatcagtcatcatcgctggtcttgatcccgtgaagagttatgta
gttatggtagatttggagtgtattgaaatgaaacgttttcgatattcatttcatcaaagc
aaatggatttctaccggtccaggggaaagtgaactcccgagcagaatgtttgttcacacg
gactccccagctcgtggtgctcattggatgcgggctcctgttagttttgataaaatgaag
ctaacaaacaatcagctggataacaatggacatataattgtgaattcaatgcacaaatat
cgtccaagagttcacataattgaacaagatgattcacaaaagcggcacactttttctttt
gaagagactgaatttattgcagttacagcttatcaaaatcatcggataacaagtctgaaa
atcgaatcaaatccatttgcaaaaggttttcgagagtgtgaagttcagggaattgaaatg
aatagtgttggtggaatgactggaggaccagcattccagtcagtttttccactaattttt
ccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGTTTCCTACCTTATCAGTCA 590 75 187 Antisense
TATCAGTCATCATCGCTGGTCTTGA 186 659 203 Antisense
GCTGGTCTTGATCCCGTGAAGAGTT 134 295 217 Antisense
GCAAATGGATTTCTACCGGTCCAGG 314 277 305 Antisense
AAGTGAACTCCCGAGCAGAATGTTT 662 157 333 Antisense
AGAATGTTTGTTCACACGGACTCCC 424 73 349 Antisense
CCAGCTCGTGGTGCTCATTGGATGC 416 271 373 Antisense
ATTGGATGCGGGCTCCTGTTAGTTT 118 3 389 Antisense
AAGCGGCACACTTTTTCTTTTGAAG 420 149 526 Antisense
GGACCAGCATTCCAGTCAGTTTTTC 155 523 691 Antisense
TCAGTTTTTCCACTAATTTTTCCAT 467 621 706 Antisense
Sequence Source Affymetrix Proprietary Database