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[186221_at]

Description Y40C5A.3 /REP_DB=WormBase Gene ID /WP=CE24257 /TR=Q9N3Y8 /GB=AAF60538.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 24      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 4.3
(-3)
A 		37.5
(0.4)
A 		31
(-0.3)
A 		63.4
(3)
A 		59
B 9.1
(-3)
A 		34.5
(-0.6)
A 		72.1
(3)
P 		39.3
(-0.1)
A 		63
C 5.7
(-3)
A 		14.9
(-2.4)
A 		33.1
(-1.2)
A 		96.1
(3)
M 		90
avr 6.4
(-3) 		29
(-0.7) 		45.4
(0.9) 		66.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 22.8
(-3)
A 		45.4
(-1.7)
A 		24.9
(-2.9)
A 		80.7
(0.4)
A 		105.2
(1.9)
P 		124.7
(3)
P 		102
B 34.5
(-2.7)
A 		37.3
(-2.6)
A 		26.7
(-3)
A 		187.3
(3)
P 		140.8
(1.3)
P 		76.3
(-1.1)
P 		161
C 1.9
(-3)
A 		56.2
(-1.7)
P 		19.9
(-2.6)
A 		249.8
(3)
A 		118.8
(-0.2)
P 		73.4
(-1.3)
P 		248
avr 19.7
(-3) 		46.3
(-2) 		23.8
(-2.8) 		172.6
(3) 		121.6
(1) 		91.5
(-0.2) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.6
(-3)
A 		8.1
(2.1)
A 		8.1
(2.1)
A 		9.3
(3)
A 		8
B 2.9
(-3)
A 		8.5
(-0.6)
A 		16.7
(3)
P 		8.4
(-0.6)
A 		14
C 1.9
(-3)
A 		4.3
(-2)
A 		11.5
(1)
A 		16.2
(3)
M 		14
avr 2.1
(-3) 		7
(-0.1) 		12.1
(3) 		11.3
(2.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 4.2
(-3)
A 		16.1
(-0.4)
A 		5.4
(-2.7)
A 		20.5
(0.5)
A 		31.8
(3)
P 		30.4
(2.7)
P 		28
B 12
(-2.3)
A 		12.4
(-2.3)
A 		6.5
(-3)
A 		49.6
(2.1)
P 		57.2
(3)
P 		28.4
(-0.4)
P 		51
C 0.7
(-3)
A 		17.1
(-1)
P 		5.1
(-2.5)
A 		50.2
(3)
A 		38.5
(1.6)
P 		24.6
(-0.1)
P 		50
avr 5.6
(-3) 		15.2
(-1.4) 		5.7
(-3) 		40.1
(2.6) 		42.5
(3) 		27.8
(0.6) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10316
Sequence Type Exemplar sequence
Representative Public ID Y40C5A.3 NCBI
Target Description Y40C5A.3 /REP_DB=WormBase Gene ID /WP=CE24257 /TR=Q9N3Y8 /GB=AAF60538.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068772 NCBI Caenorhabditis elegans Y40C5A.3 (Y40C5A.3) mRNA, complete cds. 11/11 None
Y40C5A.3 ENSEMBL cdna:known chromosome:CEL140:IV:7333089:7342835:-1 gene:Y40C5A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028103 2/11 Cross Hyb Matching Probes None
GENEFINDER00000028108 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7333094-7342841(-) 99.03 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40C5A.3
Entrez Gene 177507 Entrez gene
SwissProt Q9N3Y8 EMBL-EBI
WormBase CE24257 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60538 Hypothetical protein Y40C5A.3 [Caenorhabditis elegans] ref|NP_501173.1| Y40C5A.3 [Caenorhabditis elegans] 0.0
blast CAE61867 Hypothetical protein CBG05845 [Caenorhabditis briggsae] 1.0E-112
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:186221_AT
tgtagttcttcatgttgccaaccacaaacatccgcaaccagtcatgctgcccacaacaag
ctcaacaatcgtgttgctgtcccactcaacaacccatttgccggcataaacgatcacttg
gctacgcaatgggaatctgtcagcgaaggagagcctgagtttttactaaataggaagtca
ttaataatctcattcatcacaaagtcctctgttattttcctcgaggaatgttattttatt
gtgtctcaaatttatttattctctaaattatacctaactctgaacgagtcgaaccgtcaa
ttgttcagggtccaccggttctcaactttttgcttctctcaattcattttttttatcatt
ttaattaaatttcggatcagcatcagcatcacggatgacattcccaaggaacatcttcaa
gactccacgggtttccacgtagatcaatccagagattctcttgactcctcctcttcttgc
gagacgacggatggctggcttggtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAGTTCTTCATGTTGCCAACCAC 20 561 6496 Antisense
CAAACATCCGCAACCAGTCATGCTG 540 191 6520 Antisense
CCGGCATAAACGATCACTTGGCTAC 18 263 6596 Antisense
CACAAAGTCCTCTGTTATTTTCCTC 51 195 6693 Antisense
CCGTCAATTGTTCAGGGTCCACCGG 599 61 6789 Antisense
GCATCACGGATGACATTCCCAAGGA 521 309 6881 Antisense
GAACATCTTCAAGACTCCACGGGTT 183 343 6904 Antisense
CGGGTTTCCACGTAGATCAATCCAG 510 243 6923 Antisense
ATCCAGAGATTCTCTTGACTCCTCC 633 39 6942 Antisense
CTCCTCTTCTTGCGAGACGACGGAT 605 233 6963 Antisense
GACGACGGATGGCTGGCTTGGTGAT 95 379 6978 Antisense
Sequence Source Affymetrix Proprietary Database